Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   KO461_RS06270 Genome accession   NZ_CP076449
Coordinates   1233665..1233967 (+) Length   100 a.a.
NCBI ID   WP_005554585.1    Uniprot ID   A0A142G259
Organism   Aggregatibacter actinomycetemcomitans strain CU1000N     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1228665..1238967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KO461_RS06230 (KO461_06225) tolB 1229281..1230561 (+) 1281 WP_005544509.1 Tol-Pal system beta propeller repeat protein TolB -
  KO461_RS06235 (KO461_06230) pal 1230576..1231043 (+) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  KO461_RS06255 (KO461_06250) comN 1231747..1232268 (+) 522 WP_005562086.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  KO461_RS06260 (KO461_06255) - 1232255..1232998 (+) 744 WP_033001977.1 type II secretion system protein J -
  KO461_RS06265 (KO461_06260) - 1232995..1233690 (+) 696 WP_005537951.1 DUF2572 family protein -
  KO461_RS06270 (KO461_06265) comQ 1233665..1233967 (+) 303 WP_005554585.1 DUF5374 domain-containing protein Machinery gene
  KO461_RS06275 (KO461_06270) recC 1234013..1237402 (+) 3390 WP_205764697.1 exodeoxyribonuclease V subunit gamma -
  KO461_RS06280 (KO461_06275) rimI 1237404..1237847 (-) 444 WP_005537944.1 ribosomal protein S18-alanine N-acetyltransferase -
  KO461_RS06285 (KO461_06280) - 1237857..1238294 (-) 438 WP_005564385.1 DNA polymerase III subunit psi -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11675.61 Da        Isoelectric Point: 10.6243

>NTDB_id=575432 KO461_RS06270 WP_005554585.1 1233665..1233967(+) (comQ) [Aggregatibacter actinomycetemcomitans strain CU1000N]
MILRLRKIDYKGMSLLSLLVTLSLFSGLFLTFNQWGNVQRKSAVEIYQRFQAIQIAENQHQRRFLGLPCESQVQQNQIRF
QVVCSQNQVSVKYPRGEISL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=575432 KO461_RS06270 WP_005554585.1 1233665..1233967(+) (comQ) [Aggregatibacter actinomycetemcomitans strain CU1000N]
ATGATTTTGCGGTTACGGAAAATTGATTACAAAGGCATGAGCCTATTGTCTTTGTTGGTTACGTTGAGCTTATTCAGCGG
GCTTTTTCTCACCTTCAATCAATGGGGCAATGTGCAACGAAAAAGTGCGGTGGAAATTTATCAGCGTTTTCAAGCCATCC
AAATTGCCGAAAATCAGCATCAACGCCGTTTCCTTGGATTGCCTTGTGAATCGCAGGTGCAGCAAAATCAAATTCGTTTT
CAGGTGGTTTGTTCGCAAAATCAGGTGTCGGTGAAATATCCTCGTGGTGAAATTAGTTTATAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(61-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142G259

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

56.122

98

0.55