Detailed information NTG0575433

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG25_RS00725
• Genome accession: NZ_CP094121
• Coordinates: 156096..157058 (+)
• Length: 320 a.a.
• NCBI ID: WP_245018817.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe059
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 151096..162058

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG25_RS00695 (MPG25_00695)	panD	152503..152853 (+)	351	WP_180580766.1	aspartate 1-decarboxylase	-
MPG25_RS00700 (MPG25_00700)	-	152864..153157 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
MPG25_RS00705 (MPG25_00705)	-	153157..154152 (+)	996	WP_245019124.1	PDZ domain-containing protein	-
MPG25_RS00710 (MPG25_00710)	comB6	154160..155215 (+)	1056	WP_245019125.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG25_RS00715 (MPG25_00715)	comB7	155231..155356 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
MPG25_RS00720 (MPG25_00720)	comB8	155353..156096 (+)	744	WP_000660529.1	virB8 family protein	Machinery gene
MPG25_RS00725 (MPG25_00725)	comB9	156096..157058 (+)	963	WP_245018817.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG25_RS00730 (MPG25_00730)	comB10	157051..158190 (+)	1140	WP_245018818.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG25_RS00735 (MPG25_00735)	-	158256..159668 (+)	1413	WP_245018819.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG25_RS00740 (MPG25_00740)	gmd	159682..160827 (+)	1146	WP_245018820.1	GDP-mannose 4,6-dehydratase	-
MPG25_RS00745 (MPG25_00745)	-	160820..161752 (+)	933	WP_245018821.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36710.32 Da
• Isoelectric Point: 9.4842

>NTDB_id=575433 MPG25_RS00725 WP_245018817.1 156096..157058(+) (comB9) [Helicobacter pylori strain Hpfe059]
MRKVLCTLVGFLLVSSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNNRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQKKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=575433 MPG25_RS00725 WP_245018817.1 156096..157058(+) (comB9) [Helicobacter pylori strain Hpfe059]
ATGCGTAAGGTTTTATGCACTCTTGTGGGCTTTTTGTTGGTTTCTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
TAACAATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAAGGCTCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAAGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGACTACATTATCGCTG
AAGATGTTTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterProScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.718	100	0.934