Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPG80_RS02815 Genome accession   NZ_CP094115
Coordinates   589647..590198 (+) Length   183 a.a.
NCBI ID   WP_245056117.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe068     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 584647..595198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG80_RS02800 (MPG80_02800) cysS 584827..586224 (-) 1398 WP_245056109.1 cysteine--tRNA ligase -
  MPG80_RS02805 (MPG80_02805) murJ 586225..587685 (-) 1461 WP_245056110.1 murein biosynthesis integral membrane protein MurJ -
  MPG80_RS02810 (MPG80_02810) - 587778..589634 (+) 1857 WP_245056112.1 FapA family protein -
  MPG80_RS02815 (MPG80_02815) ruvA 589647..590198 (+) 552 WP_245056117.1 Holliday junction branch migration protein RuvA Machinery gene
  MPG80_RS02820 (MPG80_02820) - 590226..592874 (+) 2649 WP_245056118.1 DUF3519 domain-containing protein -
  MPG80_RS02825 (MPG80_02825) - 593364..594089 (-) 726 WP_000646765.1 NYN domain-containing protein -
  MPG80_RS02830 (MPG80_02830) ruvC 594219..594692 (+) 474 WP_001221180.1 crossover junction endodeoxyribonuclease RuvC -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20189.74 Da        Isoelectric Point: 8.5032

>NTDB_id=575240 MPG80_RS02815 WP_245056117.1 589647..590198(+) (ruvA) [Helicobacter pylori strain Hpfe068]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPTHNEVFLALESLGFKSTEINKV
LKTLKPHLSTEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=575240 MPG80_RS02815 WP_245056117.1 589647..590198(+) (ruvA) [Helicobacter pylori strain Hpfe068]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTTCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTTTATATGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACTAGCCCTACGCACAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGTTTTAAAAGCACTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(141-181)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

92.896

100

0.929
  ruvA Streptococcus pneumoniae TIGR4

34.872

100

0.372
  ruvA Streptococcus pneumoniae R6

34.359

100

0.366
  ruvA Streptococcus pneumoniae D39

34.359

100

0.366