Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   H681_RS16140 Genome accession   NC_020829
Coordinates   3637021..3639231 (-) Length   736 a.a.
NCBI ID   WP_015477947.1    Uniprot ID   -
Organism   Pseudomonas sp. ATCC 13867     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3632021..3644231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H681_RS16105 (H681_16095) murB 3632380..3633399 (-) 1020 WP_015477941.1 UDP-N-acetylmuramate dehydrogenase -
  H681_RS16110 (H681_16100) - 3633396..3633860 (-) 465 WP_015477942.1 low molecular weight protein-tyrosine-phosphatase -
  H681_RS16115 (H681_16105) kdsB 3633860..3634624 (-) 765 WP_015477943.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H681_RS16120 (H681_16110) - 3634630..3634815 (-) 186 WP_009621404.1 Trm112 family protein -
  H681_RS16125 (H681_16115) lpxK 3634873..3635871 (-) 999 WP_015477944.1 tetraacyldisaccharide 4'-kinase -
  H681_RS16130 (H681_16120) - 3635871..3636317 (-) 447 WP_015477945.1 biopolymer transporter ExbD -
  H681_RS16135 (H681_16125) exbB 3636314..3636949 (-) 636 WP_015477946.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  H681_RS16140 (H681_16130) comA 3637021..3639231 (-) 2211 WP_015477947.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  H681_RS16145 (H681_16135) - 3639396..3639926 (+) 531 WP_015477948.1 DUF2062 domain-containing protein -
  H681_RS16150 (H681_16140) - 3640071..3641318 (-) 1248 WP_015477949.1 lipoprotein-releasing ABC transporter permease subunit -
  H681_RS16155 (H681_16145) lolD 3641330..3642028 (-) 699 WP_015477950.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  H681_RS16160 (H681_16150) - 3642021..3643274 (-) 1254 WP_015477951.1 lipoprotein-releasing ABC transporter permease subunit -
  H681_RS16165 (H681_16155) - 3643399..3643974 (+) 576 WP_041712080.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 79418.01 Da        Isoelectric Point: 9.4131

>NTDB_id=57461 H681_RS16140 WP_015477947.1 3637021..3639231(-) (comA) [Pseudomonas sp. ATCC 13867]
MFALAAGLLALRWLSTLPAGWVLLSLVALALPLLFTRGYFIGLFLLGFAWACQSAQWALDDRLDKALDGRTLWLEGRVEG
LPDLTGPSVRFVLSDVSSPRARLPGTLRLSWFGGPAVQGGERWRLAVKLKRPYGMANGAGFDYEAWLTAQRIGAIGSVKD
GQRLEASSGPPAWREAWRQRLLAVDAQGRSGALAALVLGDASGLTTADWQVLQDTGTLHLMVISGSHISLLAGLLYAVVA
GLARFGVWPSRVPWLPCACLLAALGAWAYSLMAGFEVPLQRACIMVSIVLLWRLRHRRSGLWTPLLGALLAVLLAEPLVI
LLPGFWLSYAAVALLIFGFSGRLGRWTAWRTWLRAQWLMAIGLLPASVALGLPLSISGVVANLLAVPWVEMAVVPLALLG
SLALGIPWLGEGLLWISGGLLELLFRLLGWMAALAPAWQPVNAPAWALLLAMLGALLLLAPAGVPVRAFGLAMFLPVFWP
SIVLPPPGMAEVRVLDVGQGLSVLIRTRSQAWLYDTGARNGDFDIGERVVVPTLRSLGINRLDRLMLSHADNDHAGGALA
VKASLHPVQVVSGEADRLPRELRAQPCRKASWEVDGVHFAAWAWEGARESNDRSCVLALEANGERLLLTGDLPQAGELAW
LAEHPDIHIDWLLAGHHGSRSASGPVFVRSVTPTAAIISRGANNPYGHPHPLVVERFRALGIRIHDTAQEGALTLMLGAH
GEVRGVREGAHFWQEK

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=57461 H681_RS16140 WP_015477947.1 3637021..3639231(-) (comA) [Pseudomonas sp. ATCC 13867]
ATGTTCGCGCTGGCCGCCGGCCTGCTGGCGCTGCGCTGGCTATCGACGCTGCCAGCCGGTTGGGTGCTGCTGTCGCTGGT
GGCGCTGGCGTTGCCCTTGCTGTTCACTCGCGGCTATTTCATCGGCCTGTTCCTGCTGGGTTTTGCCTGGGCCTGCCAGT
CGGCCCAGTGGGCGTTGGATGACCGGCTGGACAAGGCGCTCGACGGTCGCACGCTGTGGCTGGAGGGCAGGGTGGAGGGG
CTGCCTGACCTTACCGGGCCTTCGGTACGTTTCGTTCTTTCCGATGTATCCAGTCCTCGGGCGCGTCTGCCTGGCACCTT
GCGCCTGTCCTGGTTCGGCGGGCCCGCGGTACAGGGTGGTGAACGCTGGCGCCTGGCGGTGAAGCTCAAGCGCCCCTACG
GCATGGCCAACGGCGCAGGCTTCGACTACGAGGCCTGGCTTACCGCGCAACGGATCGGCGCCATCGGCAGCGTGAAGGAT
GGGCAGCGCCTGGAAGCGAGCAGCGGCCCGCCGGCCTGGCGAGAAGCCTGGCGGCAACGTTTGCTGGCGGTCGATGCCCA
GGGGCGCTCCGGTGCGCTGGCGGCGCTGGTGCTGGGCGATGCCTCGGGACTGACCACGGCGGACTGGCAGGTGCTGCAGG
ACACCGGAACCCTGCACCTGATGGTGATTTCCGGTTCGCACATCTCCCTGCTGGCCGGGCTGCTCTACGCCGTGGTCGCC
GGGCTTGCACGCTTCGGCGTCTGGCCCTCGCGCGTGCCCTGGCTGCCCTGCGCCTGTCTGCTGGCCGCGCTCGGCGCCTG
GGCGTACAGCCTGATGGCGGGATTCGAGGTACCGCTGCAGCGTGCCTGCATCATGGTTTCGATTGTCCTCCTGTGGCGCC
TTCGCCATCGCCGTAGCGGTCTGTGGACACCGCTGCTCGGCGCCTTGCTGGCGGTACTGCTGGCGGAACCGTTGGTCATA
CTGTTGCCCGGCTTCTGGCTGTCCTATGCGGCGGTGGCGTTGTTGATCTTCGGTTTTTCCGGCCGACTGGGGCGCTGGAC
GGCCTGGCGCACCTGGCTGCGTGCGCAGTGGCTGATGGCGATCGGCTTGCTGCCCGCGTCCGTGGCGCTTGGCCTGCCGC
TGAGCATTTCCGGGGTGGTCGCCAACCTGCTTGCGGTGCCCTGGGTGGAAATGGCGGTGGTGCCGCTGGCCTTGCTGGGC
AGCCTGGCGCTGGGCATTCCCTGGCTGGGCGAAGGGTTGCTCTGGATCTCCGGCGGGCTGCTCGAGTTGCTGTTCCGCCT
GCTGGGCTGGATGGCGGCCCTGGCGCCTGCCTGGCAGCCCGTCAACGCGCCGGCCTGGGCGCTGCTGCTGGCCATGCTGG
GTGCGTTGTTGCTGCTGGCGCCGGCTGGCGTACCGGTGCGAGCGTTCGGACTGGCGATGTTCCTGCCGGTGTTCTGGCCG
TCGATCGTGCTGCCGCCGCCGGGGATGGCCGAGGTCCGGGTGCTGGATGTGGGGCAGGGCCTTTCGGTGTTGATCCGCAC
GCGCAGTCAGGCTTGGCTCTACGACACCGGCGCGCGCAATGGCGATTTCGATATCGGCGAGCGGGTCGTCGTACCGACGC
TGCGGAGTCTGGGGATCAACCGTCTGGACCGATTGATGCTCAGTCACGCGGACAACGACCATGCAGGTGGCGCCCTGGCG
GTGAAGGCGTCGCTGCATCCCGTGCAGGTGGTCAGCGGCGAGGCGGATCGGCTGCCCCGCGAGTTGCGGGCACAGCCCTG
TCGGAAGGCGAGCTGGGAGGTCGACGGCGTCCACTTCGCGGCCTGGGCATGGGAGGGTGCACGGGAAAGCAACGACCGCT
CCTGCGTTCTGGCGCTCGAAGCCAATGGCGAGCGCCTGCTGCTGACCGGCGACCTGCCGCAGGCCGGCGAACTGGCCTGG
CTGGCCGAACACCCGGATATCCACATCGACTGGTTGCTGGCGGGGCACCACGGCAGCCGCAGCGCTTCCGGACCGGTCTT
CGTGCGCAGCGTGACGCCCACTGCCGCGATCATTTCCCGCGGCGCCAATAATCCTTATGGCCACCCCCATCCGTTGGTCG
TCGAGCGCTTCCGGGCACTGGGCATCCGGATTCACGATACGGCACAGGAGGGTGCGCTGACGCTGATGCTCGGCGCCCAC
GGGGAGGTCCGGGGAGTGCGGGAAGGCGCACATTTCTGGCAAGAAAAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(196-459)

Domain of unknown function (DUF4131) (DUF4131)

(19-163)

Metallo-beta-lactamase superfamily (Lactamase_B)

(496-648)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

57.382

97.554

0.56

Multiple sequence alignment