Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   H681_RS16135 Genome accession   NC_020829
Coordinates   3636314..3636949 (-) Length   211 a.a.
NCBI ID   WP_015477946.1    Uniprot ID   M4WY50
Organism   Pseudomonas sp. ATCC 13867     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3631314..3641949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H681_RS16105 (H681_16095) murB 3632380..3633399 (-) 1020 WP_015477941.1 UDP-N-acetylmuramate dehydrogenase -
  H681_RS16110 (H681_16100) - 3633396..3633860 (-) 465 WP_015477942.1 low molecular weight protein-tyrosine-phosphatase -
  H681_RS16115 (H681_16105) kdsB 3633860..3634624 (-) 765 WP_015477943.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H681_RS16120 (H681_16110) - 3634630..3634815 (-) 186 WP_009621404.1 Trm112 family protein -
  H681_RS16125 (H681_16115) lpxK 3634873..3635871 (-) 999 WP_015477944.1 tetraacyldisaccharide 4'-kinase -
  H681_RS16130 (H681_16120) - 3635871..3636317 (-) 447 WP_015477945.1 biopolymer transporter ExbD -
  H681_RS16135 (H681_16125) exbB 3636314..3636949 (-) 636 WP_015477946.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  H681_RS16140 (H681_16130) comA 3637021..3639231 (-) 2211 WP_015477947.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  H681_RS16145 (H681_16135) - 3639396..3639926 (+) 531 WP_015477948.1 DUF2062 domain-containing protein -
  H681_RS16150 (H681_16140) - 3640071..3641318 (-) 1248 WP_015477949.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22912.19 Da        Isoelectric Point: 8.9537

>NTDB_id=57460 H681_RS16135 WP_015477946.1 3636314..3636949(-) (exbB) [Pseudomonas sp. ATCC 13867]
MWELVKAGGWMMLPILLSSIAAMAIVAERLWTLRKSRVAPPQLLGQVWKQIKGKKMNSQALKDLRASSPLGEILAAGLAN
SKHGREIMKECIEEAASRVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFSAFMGDGMANAPMLAGGISKALITTAS
GLIVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVTQGDREVDFAEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=57460 H681_RS16135 WP_015477946.1 3636314..3636949(-) (exbB) [Pseudomonas sp. ATCC 13867]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCTTGCTGAGCTCCATCGCCGCGATGGCGATCGTCGC
AGAACGTCTCTGGACCCTGCGCAAGAGTCGCGTGGCTCCGCCACAGTTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGAAGATGAACAGCCAGGCCCTGAAGGACCTGCGCGCGTCGTCCCCGCTGGGTGAGATCCTTGCCGCTGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCTTCCCGCGTCATCCATGAGCTGGAGCGCTACCT
CAATGCCCTGGGCACCATCGCCGCGATGGCGCCGCTGCTCGGCCTGCTGGGCACCGTGTTCGGCATGATCCAGATCTTCA
GCGCCTTCATGGGCGACGGCATGGCCAACGCGCCGATGCTCGCCGGCGGTATTTCCAAGGCCCTGATCACCACCGCGTCC
GGCCTGATCGTGGCGATCCCGGCGGTGTTCTTCCACCGCTACCTGCTGCGCCGTGTCGATGAGCTGGTGATCGCGATGGA
ACAGGAAGCCATCAAGCTGGTGGAAGTCACCCAGGGCGATCGCGAAGTCGATTTCGCCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M4WY50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.569

100

0.806

Multiple sequence alignment