Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   MPG82_RS01900 Genome accession   NZ_CP094092
Coordinates   380197..382173 (+) Length   658 a.a.
NCBI ID   WP_245083616.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe086     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 375197..387173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG82_RS01885 (MPG82_01885) flgK 375213..377033 (+) 1821 WP_245083085.1 flagellar hook-associated protein FlgK -
  MPG82_RS01890 (MPG82_01890) ggt 377236..378939 (+) 1704 WP_245083088.1 gamma-glutamyltransferase -
  MPG82_RS01895 (MPG82_01895) - 379205..379975 (+) 771 WP_245083091.1 tetratricopeptide repeat protein -
  MPG82_RS01900 (MPG82_01900) uvrB 380197..382173 (+) 1977 WP_245083616.1 excinuclease ABC subunit UvrB Machinery gene
  MPG82_RS01905 (MPG82_01905) - 382170..383003 (-) 834 WP_180448184.1 outer membrane protein -
  MPG82_RS01910 (MPG82_01910) purB 383075..384397 (-) 1323 WP_245083093.1 adenylosuccinate lyase -
  MPG82_RS01915 (MPG82_01915) - 384507..385451 (-) 945 WP_000238169.1 thiamine pyrophosphate-dependent enzyme -
  MPG82_RS01920 (MPG82_01920) - 385464..386687 (-) 1224 WP_015644785.1 2-oxoacid:ferredoxin oxidoreductase subunit alpha -
  MPG82_RS01925 (MPG82_01925) - 386697..387089 (-) 393 WP_128018404.1 4Fe-4S dicluster domain-containing protein -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 75974.49 Da        Isoelectric Point: 6.9241

>NTDB_id=574589 MPG82_RS01900 WP_245083616.1 380197..382173(+) (uvrB) [Helicobacter pylori strain Hpfe086]
MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIANTNKPTLIMSHNKTLCAQLYSEFKAFF
PHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLRLSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKI
KVGEKRAYKSFLLKLVEMGYSRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV
MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVCKGIENYARHFTGKAPNET
PFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNK
LELELSKKNVAEQIIRPTGLLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHS
EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRAARNANGKVLLYAKKIT
QSMQKAFEITSYRRAKQEEFNRLHHITPKTVTRALEEELKLRDDEVKIAKALKKDKIPKNEREKIIKELDKKMRECAKNL
DFEEAMRLRDEIAKLRVL

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=574589 MPG82_RS01900 WP_245083616.1 380197..382173(+) (uvrB) [Helicobacter pylori strain Hpfe086]
ATGCCTTTATTTGATTTAAAAAGCCCTTACCCACCAGCAGGCGATCAGCCCCAAGCCATAGAAGCCTTAACGAAGAGCTT
GAAAAATAACAACCATTATCAAACTTTAGTGGGGGTTACAGGGAGCGGTAAAACTTATACGATGGCTAATATCATCGCTA
ATACCAACAAACCTACTCTGATCATGAGTCATAATAAGACCTTATGCGCGCAGCTCTATAGCGAATTTAAGGCGTTTTTC
CCGCATAATAGGGTGGAGTATTTTATCTCCCACTTTGACTACTACCAGCCTGAAAGCTATATCCCTAGAAGGGATTTATT
CATTGAAAAAGACAGCTCTATTAATGATGATTTAGAGCGTTTGAGATTGAGCGCGGCCACCTCACTTTTAGGTTATGATG
ATGTGATCGTGATAGCGAGCGTTTCGGCTAATTATGGTTTGGGTAACCCTGAAGAATATTTAAAAGTCATGGAAAAAATC
AAAGTGGGCGAGAAGCGTGCTTATAAGAGCTTTTTACTCAAGCTAGTAGAAATGGGTTATAGCCGTAATGAAGTGGTTTT
TGATAGGGGGAGCTTCAGAGCGACCGGAGAATGCGTGGATATTTTCCCCGCTTATAATGATGCTGAATTTATCAGGATTG
AATTTTTTGGCGATGAGATAGAAAGGATTGCTGTCTTTGACGCTTTAGAAAGAAATGAAATCAAGCGCTTGGATTCTGTC
ATGCTTTATGCGGCCAGTCAGTTTGCCGTAGGGAGTGAGAGGTTGAATTTAGCTATTAAAAGCATTGAAGATGAACTCGC
TTTAAGATTGAAATTTTTTAAAGAGCAGGATAAAATGCTTGAATACAACCGCCTCAAACAACGCACCGAGCATGATTTAG
AAATGATTAGTGCAACCGGTGTGTGTAAGGGCATTGAAAATTACGCGCGCCATTTTACAGGCAAAGCCCCTAATGAAACG
CCTTTTTGTTTGTTTGATTATTTAGGGATATTTGAGCGGGAGTTTTTAGTCATTGTGGATGAAAGCCATGTGAGTTTACC
GCAGTTTGGGGGGATGTATGCAGGGGATATGAGCAGGAAAAGCGTTTTAGTGGAATATGGTTTTAGATTGCCTAGCGCTT
TAGACAACCGCCCTTTAAAATTTGATGAATTTATCCATAAAAATTGCCAGTTCCTTTTTGTGTCCGCTACGCCCAATAAG
CTAGAACTAGAGCTTTCTAAAAAGAATGTTGCTGAGCAAATCATTCGCCCTACAGGGCTTTTAGACCCCAAATTTGAAGT
GCGAGACAGCGATAAGCAAGTCCAGGATTTATTTGATGAAATCAAGTTAGTGGTGGCTAGAGATGAAAGGGTGCTCATCA
CCACGCTCACTAAAAAAATGGCAGAAGAATTGTGCAAATATTATGCCGAATGGGGCTTGAAGGCGCGTTACATGCATAGT
GAAATTGATGCGATTGAACGAAATCACATCATCCGCTCTTTAAGGCTTAAAGAATTTGACATTTTAATAGGGATCAATCT
CTTAAGAGAAGGACTGGATTTGCCTGAAGTTTCTTTAGTAGCGATCATGGATGCGGATAAAGAAGGGTTTTTAAGGAGTG
AAACAAGCCTCATTCAAACCATGGGGCGAGCTGCTAGAAACGCTAATGGCAAGGTTTTATTATACGCTAAAAAAATCACC
CAAAGCATGCAAAAAGCCTTTGAAATTACGAGCTACAGGCGCGCTAAGCAAGAAGAGTTTAATAGGCTTCATCATATCAC
CCCAAAAACCGTTACTCGCGCTTTAGAAGAAGAGTTGAAATTAAGAGACGATGAGGTTAAAATCGCTAAAGCCTTAAAAA
AGGACAAAATCCCTAAAAACGAAAGGGAAAAAATCATTAAAGAACTGGATAAAAAAATGCGAGAATGCGCGAAAAATTTG
GATTTTGAAGAAGCGATGCGTTTGAGAGATGAAATCGCTAAATTAAGAGTGCTTTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(445-547)

UvrB/uvrC motif (UVR)

(623-656)

UvrB interaction domain (UvrB_inter)

(159-248)

Ultra-violet resistance protein B (UvrB)

(554-595)

Type III restriction enzyme, res subunit (ResIII)

(15-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

49.321

100

0.497
  uvrB Streptococcus pneumoniae TIGR4

49.321

100

0.497
  uvrB Streptococcus pneumoniae D39

49.321

100

0.497