Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   KM776_RS13075 Genome accession   NZ_CP076290
Coordinates   2671250..2671585 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain Q12     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2666250..2676585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM776_RS13055 (KM776_13055) gcvT 2666860..2667960 (-) 1101 WP_024085597.1 glycine cleavage system aminomethyltransferase GcvT -
  KM776_RS13060 (KM776_13060) - 2668384..2670054 (+) 1671 WP_069013074.1 SNF2-related protein -
  KM776_RS13065 (KM776_13065) - 2670072..2670866 (+) 795 WP_003153106.1 YqhG family protein -
  KM776_RS13070 (KM776_13070) sinI 2671043..2671216 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  KM776_RS13075 (KM776_13075) sinR 2671250..2671585 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  KM776_RS13080 (KM776_13080) tasA 2671633..2672418 (-) 786 WP_003153102.1 biofilm matrix protein TasA -
  KM776_RS13085 (KM776_13085) sipW 2672482..2673066 (-) 585 WP_003153100.1 signal peptidase I SipW -
  KM776_RS13090 (KM776_13090) tapA 2673038..2673709 (-) 672 WP_003153099.1 amyloid fiber anchoring/assembly protein TapA -
  KM776_RS13095 (KM776_13095) - 2673968..2674297 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  KM776_RS13100 (KM776_13100) - 2674337..2674516 (-) 180 WP_003153093.1 YqzE family protein -
  KM776_RS13105 (KM776_13105) comGG 2674573..2674950 (-) 378 WP_003153092.1 competence type IV pilus minor pilin ComGG Machinery gene
  KM776_RS13110 (KM776_13110) comGF 2674951..2675451 (-) 501 WP_223203779.1 competence type IV pilus minor pilin ComGF -
  KM776_RS13115 (KM776_13115) comGE 2675360..2675674 (-) 315 WP_003153089.1 competence type IV pilus minor pilin ComGE -
  KM776_RS13120 (KM776_13120) comGD 2675658..2676095 (-) 438 WP_003153088.1 competence type IV pilus minor pilin ComGD Machinery gene
  KM776_RS13125 (KM776_13125) comGC 2676085..2676393 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=574470 KM776_RS13075 WP_003153104.1 2671250..2671585(+) (sinR) [Bacillus velezensis strain Q12]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=574470 KM776_RS13075 WP_003153104.1 2671250..2671585(+) (sinR) [Bacillus velezensis strain Q12]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991