Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   H681_RS04760 Genome accession   NC_020829
Coordinates   1031451..1033040 (-) Length   529 a.a.
NCBI ID   WP_015475702.1    Uniprot ID   M4WSW1
Organism   Pseudomonas sp. ATCC 13867     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1026451..1038040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H681_RS04735 (H681_04720) pilV 1026739..1027299 (-) 561 WP_015475697.1 type IV pilus modification protein PilV -
  H681_RS04740 (H681_04725) - 1027308..1027796 (-) 489 WP_015475698.1 GspH/FimT family pseudopilin -
  H681_RS04745 (H681_04730) - 1027947..1028459 (-) 513 WP_015475699.1 GspH/FimT family pseudopilin -
  H681_RS04750 (H681_04735) thiO 1028658..1029767 (+) 1110 WP_015475700.1 glycine oxidase ThiO -
  H681_RS04755 (H681_04740) pilR 1030095..1031435 (-) 1341 WP_015475701.1 sigma-54 dependent transcriptional regulator Regulator
  H681_RS04760 (H681_04745) pilS 1031451..1033040 (-) 1590 WP_015475702.1 ATP-binding protein Regulator
  H681_RS04765 (H681_04750) - 1033030..1033266 (-) 237 WP_015475703.1 PP0621 family protein -
  H681_RS04770 (H681_04755) - 1033410..1034432 (-) 1023 WP_015475704.1 outer membrane protein assembly factor BamD -
  H681_RS04775 (H681_04760) rluD 1034581..1035540 (+) 960 WP_015475705.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  H681_RS04780 (H681_04765) pgeF 1035537..1036262 (+) 726 WP_015475706.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58690.94 Da        Isoelectric Point: 7.2911

>NTDB_id=57447 H681_RS04760 WP_015475702.1 1031451..1033040(-) (pilS) [Pseudomonas sp. ATCC 13867]
MGTDGISLTGQGLRVLRLYHLYRLTIGLALVLLISSNYDDDILKLAHTELFHIGCWTYLVVNILVAVLMPAPRKLMPLFV
LAACDVLMLSGLFYAAGGVPSGIGNLMVVSVAIANILLRGRVGLLIAALASIGLIYLTFYLSLTQTLALNYYVQAGSLGA
MCFASALLIQALARRQQIVENLAEQRATTVANLEELNALILQRMRTGILVLDDQQRVLLANQSATTLLGGQELTGHSLAE
HTPALLASLQQWQQNPALRPPSLQPRETAPSVQPAFIPLHRGNEQHILMFLEDISQIAQQAQQLKLVALGRLTAGIAHEV
RNPLGAISHAAQLLLESEELDPPDRRLTQIIQDQSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLQRFSGEMREGLRDGQ
QLHVETGPGTVQTRMDPHQLTQVLTNLVQNGLRYSAKKNDTGQVWLRLFRDSETDLPILEVLDDGQGIAAEQRVKLFEPF
FTTESKGTGLGLYISRELCESNQARLDYKTRDEGGSCFRITFAHPRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=57447 H681_RS04760 WP_015475702.1 1031451..1033040(-) (pilS) [Pseudomonas sp. ATCC 13867]
GTGGGCACTGACGGCATCTCGCTCACCGGGCAGGGACTGCGCGTCCTGCGCCTGTACCACCTGTACCGCCTGACCATCGG
CCTGGCGCTGGTACTGCTGATTTCCAGCAATTACGACGACGATATCCTCAAGCTCGCCCACACCGAGCTGTTCCATATCG
GCTGCTGGACCTATCTGGTGGTCAACATTCTGGTCGCGGTCCTGATGCCGGCGCCCCGGAAGCTGATGCCGCTGTTCGTG
CTGGCGGCATGCGACGTGCTGATGCTCAGCGGGTTGTTCTACGCCGCCGGCGGCGTTCCCAGCGGCATCGGCAACCTGAT
GGTGGTTTCCGTCGCCATCGCCAACATCCTGCTGCGCGGCCGCGTTGGCCTGCTGATCGCCGCACTGGCCTCCATCGGCC
TGATCTACCTGACGTTCTATCTCAGCCTCACCCAGACGCTGGCCCTCAACTACTACGTGCAAGCGGGTAGCCTGGGCGCC
ATGTGCTTCGCCTCGGCGCTGCTGATCCAGGCCCTGGCGCGCCGCCAGCAGATCGTCGAGAACCTTGCGGAACAGCGGGC
CACCACGGTCGCCAACCTCGAAGAACTCAACGCCCTGATTCTCCAGCGCATGCGTACCGGCATCCTGGTACTGGACGACC
AGCAGCGTGTGCTGCTGGCCAACCAGAGCGCCACCACCCTGCTCGGCGGGCAGGAACTGACCGGCCACTCGCTGGCCGAG
CACACCCCGGCGCTGCTCGCCAGCCTGCAGCAATGGCAGCAGAACCCCGCGCTGCGGCCGCCCAGCCTGCAGCCACGCGA
GACCGCGCCCAGCGTGCAGCCCGCCTTCATCCCCCTGCACCGTGGCAACGAACAGCACATCCTGATGTTCCTCGAGGACA
TCTCGCAGATCGCCCAGCAGGCGCAACAGCTCAAGCTGGTGGCCCTCGGCCGGCTGACCGCCGGCATCGCCCATGAGGTC
CGCAACCCCCTGGGCGCCATCAGCCACGCTGCACAACTGCTGCTGGAATCCGAAGAGCTCGACCCGCCGGATCGGCGGCT
GACGCAGATCATCCAGGACCAGTCGCGGCGGATGAACCTGGTGATCGAGAACGTCCTGCAACTGTCCCGCCGCCGCCAGG
CCGAACCGCAACTGCTCGACCTGAAGTACTGGCTGCAGCGCTTCTCCGGCGAAATGCGCGAAGGGCTGCGGGACGGCCAG
CAACTGCACGTCGAAACCGGACCGGGCACCGTGCAGACGCGCATGGACCCCCATCAGTTGACGCAGGTGCTGACCAACCT
TGTGCAGAATGGGTTACGGTACAGCGCCAAGAAGAACGACACCGGCCAGGTGTGGCTGCGCCTGTTCCGCGATAGCGAAA
CCGACCTGCCGATCCTGGAAGTGCTGGACGACGGCCAGGGCATCGCCGCCGAACAGCGGGTGAAGCTGTTCGAGCCATTC
TTTACCACCGAGAGCAAAGGCACCGGTCTTGGGCTGTACATCTCCCGGGAGCTGTGCGAAAGCAACCAGGCGCGCCTGGA
CTATAAAACGCGTGACGAAGGAGGCAGTTGTTTCCGCATCACCTTCGCCCATCCACGCAAACAAAGCTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(308-372)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M4WSW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

70.906

98.11

0.696

Multiple sequence alignment