Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   H681_RS04755 Genome accession   NC_020829
Coordinates   1030095..1031435 (-) Length   446 a.a.
NCBI ID   WP_015475701.1    Uniprot ID   M4WRV5
Organism   Pseudomonas sp. ATCC 13867     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1025095..1036435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H681_RS04725 (H681_04710) - 1025274..1025900 (-) 627 WP_015475695.1 PilX N-terminal domain-containing pilus assembly protein -
  H681_RS04730 (H681_04715) - 1025897..1026742 (-) 846 WP_015475696.1 PilW family protein -
  H681_RS04735 (H681_04720) pilV 1026739..1027299 (-) 561 WP_015475697.1 type IV pilus modification protein PilV -
  H681_RS04740 (H681_04725) - 1027308..1027796 (-) 489 WP_015475698.1 GspH/FimT family pseudopilin -
  H681_RS04745 (H681_04730) - 1027947..1028459 (-) 513 WP_015475699.1 GspH/FimT family pseudopilin -
  H681_RS04750 (H681_04735) thiO 1028658..1029767 (+) 1110 WP_015475700.1 glycine oxidase ThiO -
  H681_RS04755 (H681_04740) pilR 1030095..1031435 (-) 1341 WP_015475701.1 sigma-54 dependent transcriptional regulator Regulator
  H681_RS04760 (H681_04745) pilS 1031451..1033040 (-) 1590 WP_015475702.1 ATP-binding protein Regulator
  H681_RS04765 (H681_04750) - 1033030..1033266 (-) 237 WP_015475703.1 PP0621 family protein -
  H681_RS04770 (H681_04755) - 1033410..1034432 (-) 1023 WP_015475704.1 outer membrane protein assembly factor BamD -
  H681_RS04775 (H681_04760) rluD 1034581..1035540 (+) 960 WP_015475705.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  H681_RS04780 (H681_04765) pgeF 1035537..1036262 (+) 726 WP_015475706.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49813.11 Da        Isoelectric Point: 6.1149

>NTDB_id=57446 H681_RS04755 WP_015475701.1 1030095..1031435(-) (pilR) [Pseudomonas sp. ATCC 13867]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDFCLTDMRLPDGTGLDLVQYIQQRHPQTPVAM
ITAFGSLDTAVQALKAGAFDFLTKPVDLARLRELVGTALRLRFPDAEEAPVDNRLLGDSPPMRQMRNQIAKLARSQAPVY
ISGESGSGKELVARLIHEQGPRANIAFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKLGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQENAVDVRILCATHKDLATEVSAGRFRQDLYYRLNVIELRVPPLRERREDIPLLTDRV
LKRLAGDVGLPVATVSSDAVEKLKSYRFPGNVRELENMLERAYTLCENDVIQSHDLRLAETTSSGDNGGPASLAQIDNLE
DYLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=57446 H681_RS04755 WP_015475701.1 1030095..1031435(-) (pilR) [Pseudomonas sp. ATCC 13867]
ATGAGTCGTCAAAAAGCCCTGATCGTCGATGACGAACCCGATATCCGCGAGCTGCTGGAGATCACCCTCGGTCGCATGAA
GCTCGATACCCGCAGCGCCCGCAACGTCAAGGAAGCGCGTGAGCTCCTGGCCCGCGAGCCGTTCGACTTCTGCCTCACCG
ACATGCGCCTGCCCGACGGTACCGGCCTGGATCTGGTGCAGTACATCCAGCAGCGCCATCCGCAGACACCGGTGGCGATG
ATCACCGCGTTCGGCAGCCTGGACACCGCGGTCCAGGCGCTAAAAGCCGGCGCCTTCGACTTTCTCACCAAGCCCGTCGA
CCTCGCGCGCCTGCGCGAACTGGTCGGCACGGCGCTGCGCCTGCGCTTCCCCGATGCCGAGGAAGCCCCGGTGGACAACC
GCCTGCTCGGCGACTCGCCGCCGATGCGCCAGATGCGCAACCAGATCGCCAAGCTGGCGCGCAGCCAGGCACCGGTCTAC
ATCAGCGGCGAATCGGGCAGCGGCAAGGAACTGGTCGCCCGACTGATCCATGAACAGGGTCCGCGCGCGAATATCGCCTT
CGTCCCGGTGAACTGCGGGGCGATTCCGTCAGAGCTGATGGAAAGCGAGTTCTTCGGCCACAGGAAAGGCAGCTTCACCG
GCGCGGTAGAGGACAAGCTGGGACTGTTCCAGGCCGCCAACGGCGGCACCCTCTTCCTCGACGAGGTCGCCGACCTGCCG
CTGCCCATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAAGCCGTGCGCGCCGTCGGCGGCCAGCAGGAAAACGCGGT
GGACGTACGCATCCTCTGCGCGACCCACAAGGATCTCGCCACGGAAGTCTCCGCCGGCCGCTTCCGCCAGGACCTCTACT
ACCGCCTGAATGTCATCGAGCTGCGCGTACCGCCACTGCGCGAGCGCCGCGAAGACATTCCGCTGCTCACCGACCGCGTG
CTCAAGCGCCTGGCCGGCGATGTCGGACTGCCCGTGGCGACGGTCAGTTCCGATGCCGTGGAGAAGCTCAAGAGCTACCG
TTTCCCCGGCAACGTGCGCGAACTGGAGAACATGCTCGAGCGCGCCTACACGCTGTGCGAGAACGACGTGATCCAGTCCC
ATGACCTGCGCCTGGCCGAGACCACCAGCAGCGGCGACAACGGCGGCCCGGCGAGCCTCGCGCAGATCGACAACCTCGAG
GACTACCTCGAAGACATCGAGCGCAAGCTGATCATGCAAGCCCTGGAGGAAACCCGCTGGAACCGCACCGCGGCTGCGCA
GCGCCTGGGGCTCACCTTCCGCTCGATGCGCTACCGGCTGAAGAAGCTGGGGATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M4WRV5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.565

100

0.886
  pilR Acinetobacter baumannii strain A118

48.69

100

0.5

Multiple sequence alignment