Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPG38_RS02990 Genome accession   NZ_CP094080
Coordinates   631449..632000 (+) Length   183 a.a.
NCBI ID   WP_245101535.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe099     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 626449..637000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG38_RS02975 (MPG38_02975) cysS 626628..628025 (-) 1398 WP_245101532.1 cysteine--tRNA ligase -
  MPG38_RS02980 (MPG38_02980) murJ 628026..629486 (-) 1461 WP_245101533.1 murein biosynthesis integral membrane protein MurJ -
  MPG38_RS02985 (MPG38_02985) - 629579..631423 (+) 1845 WP_245101534.1 FapA family protein -
  MPG38_RS02990 (MPG38_02990) ruvA 631449..632000 (+) 552 WP_245101535.1 Holliday junction branch migration protein RuvA Machinery gene
  MPG38_RS02995 (MPG38_02995) - 632151..634019 (+) 1869 WP_245101642.1 DUF3519 domain-containing protein -
  MPG38_RS03000 (MPG38_03000) - 634003..634473 (+) 471 WP_245101536.1 DUF3519 domain-containing protein -
  MPG38_RS03005 (MPG38_03005) - 634488..634850 (+) 363 WP_245101537.1 hypothetical protein -
  MPG38_RS03010 (MPG38_03010) - 634885..636021 (-) 1137 WP_154500333.1 NAD-binding protein -
  MPG38_RS03015 (MPG38_03015) rpmB 636171..636359 (-) 189 WP_245101538.1 50S ribosomal protein L28 -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20160.79 Da        Isoelectric Point: 9.4311

>NTDB_id=574272 MPG38_RS02990 WP_245101535.1 631449..632000(+) (ruvA) [Helicobacter pylori strain Hpfe099]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDTHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDEIGPARNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=574272 MPG38_RS02990 WP_245101535.1 631449..632000(+) (ruvA) [Helicobacter pylori strain Hpfe099]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATACGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAATTGGCCCTGCGCGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCTTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAGCAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(139-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

93.989

100

0.94
  ruvA Streptococcus pneumoniae R6

33.846

100

0.361
  ruvA Streptococcus pneumoniae D39

33.846

100

0.361
  ruvA Streptococcus pneumoniae TIGR4

33.673

100

0.361