Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPG56_RS02990 Genome accession   NZ_CP094076
Coordinates   626984..627535 (+) Length   183 a.a.
NCBI ID   WP_245044225.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 621984..632535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG56_RS02975 (MPG56_02975) cysS 622163..623560 (-) 1398 WP_096424063.1 cysteine--tRNA ligase -
  MPG56_RS02980 (MPG56_02980) murJ 623561..625021 (-) 1461 WP_245044221.1 murein biosynthesis integral membrane protein MurJ -
  MPG56_RS02985 (MPG56_02985) - 625114..626958 (+) 1845 WP_245044223.1 FapA family protein -
  MPG56_RS02990 (MPG56_02990) ruvA 626984..627535 (+) 552 WP_245044225.1 Holliday junction branch migration protein RuvA Machinery gene
  MPG56_RS02995 (MPG56_02995) - 627626..627844 (-) 219 WP_245044226.1 hypothetical protein -
  MPG56_RS03000 (MPG56_03000) - 627843..630329 (+) 2487 Protein_577 DUF3519 domain-containing protein -
  MPG56_RS03005 (MPG56_03005) - 630735..631460 (-) 726 WP_000646759.1 NYN domain-containing protein -
  MPG56_RS03010 (MPG56_03010) ruvC 631591..632064 (+) 474 WP_001221180.1 crossover junction endodeoxyribonuclease RuvC -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20072.69 Da        Isoelectric Point: 8.0194

>NTDB_id=574149 MPG56_RS02990 WP_245044225.1 626984..627535(+) (ruvA) [Helicobacter pylori strain Hpfe102]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFEKLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPVCNEVFLALESLGFKSAEINKV
LKTLKPNLSTEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=574149 MPG56_RS02990 WP_245044225.1 626984..627535(+) (ruvA) [Helicobacter pylori strain Hpfe102]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTTCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCACATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAAGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACTAGCCCTGTGTGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGTGCTGAAATCAATAAAGTT
TTAAAAACCTTAAAACCCAATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(141-181)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

93.443

100

0.934
  ruvA Bacillus subtilis subsp. subtilis str. 168

32.836

100

0.361
  ruvA Streptococcus pneumoniae TIGR4

33.846

100

0.361