Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KM563_RS06180 Genome accession   NZ_CP076253
Coordinates   1378960..1380348 (-) Length   462 a.a.
NCBI ID   WP_009580426.1    Uniprot ID   A0A1M4J681
Organism   Xanthomonas translucens pv. graminis strain ART-Xtg2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1375274..1389011 1378960..1380348 within 0


Gene organization within MGE regions


Location: 1375274..1389011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM563_RS06150 - 1375274..1375525 (-) 252 WP_009580414.1 transposase -
  KM563_RS06155 (KM563_06115) - 1375625..1375945 (-) 321 WP_009580416.1 DUF86 domain-containing protein -
  KM563_RS06160 (KM563_06120) - 1375942..1376232 (-) 291 WP_009580418.1 nucleotidyltransferase family protein -
  KM563_RS06165 (KM563_06125) pilB 1376439..1378175 (+) 1737 WP_009580420.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KM563_RS06170 (KM563_06130) - 1378203..1378496 (-) 294 WP_009580422.1 addiction module antidote protein -
  KM563_RS06175 (KM563_06135) - 1378499..1378795 (-) 297 WP_009580424.1 type II toxin-antitoxin system RelE/ParE family toxin -
  KM563_RS06180 (KM563_06140) pilR 1378960..1380348 (-) 1389 WP_009580426.1 sigma-54-dependent transcriptional regulator Regulator
  KM563_RS06185 (KM563_06145) - 1380423..1382036 (-) 1614 WP_009580428.1 sensor histidine kinase -
  KM563_RS06190 (KM563_06150) sucC 1382335..1383498 (+) 1164 WP_009580518.1 ADP-forming succinate--CoA ligase subunit beta -
  KM563_RS06195 (KM563_06155) sucD 1383522..1384394 (+) 873 WP_009580520.1 succinate--CoA ligase subunit alpha -
  KM563_RS06200 (KM563_06160) - 1384794..1386887 (+) 2094 WP_009580522.1 pyrroloquinoline quinone-dependent dehydrogenase -
  KM563_RS06205 (KM563_06165) - 1387128..1389011 (-) 1884 WP_009580524.1 hypothetical protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49799.21 Da        Isoelectric Point: 6.5828

>NTDB_id=574067 KM563_RS06180 WP_009580426.1 1378960..1380348(-) (pilR) [Xanthomonas translucens pv. graminis strain ART-Xtg2]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDLHVLRGLVKHALELNNSERAAPPAPPPEQASRLLGASAAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLAMQVKLLRAIQEKSVRPVGASIEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRDRGGDLP
QLAAAILARLAKSHGRATPLLSPSALDALNRYAFPGNVRELENILERALAMAEDDQISAADLHLPQPGNSARAAAETAPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=574067 KM563_RS06180 WP_009580426.1 1378960..1380348(-) (pilR) [Xanthomonas translucens pv. graminis strain ART-Xtg2]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCGAGCAATCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACCCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTAGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACCTGCACGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAACTCAACAACAGCGAACGCGCCGCGCCGCCGGCACCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGCCTCGGCGGCGATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAGTCCGGCGTCGGCAAGGAGCTGGTCGCGCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTGGAC
GAAGTGGCCGAGCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGTGCGCCCGGTCGGCGC
CTCGATCGAAGTGCCCACCGACGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGACCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCACGGCTGGCCAAGAGCCATGGCCGGGCCACCCCGCTGCTGTCGCCGTCGGCGCTGGA
CGCGCTGAACCGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCCTGGCAATGGCCGAAG
ACGACCAGATCAGCGCCGCCGACCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGCCGCGGCCGAAACCGCGCCCGCG
CTGCCGCCCGGCGTGGTCGACATCGACCCGACCTCCTCGGCCCTGCCCTCCTACATCGAACAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGTGCGCTGCGCT
ACAAGCTCAAGAAGTTGGGAATGGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M4J681

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.527

99.351

0.621
  pilR Acinetobacter baumannii strain A118

47.084

100

0.472