Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KM547_RS14545 Genome accession   NZ_CP076251
Coordinates   3335585..3336973 (+) Length   462 a.a.
NCBI ID   WP_003477091.1    Uniprot ID   A0A1C3TL96
Organism   Xanthomonas translucens pv. phlei strain LMG 730     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3330585..3341973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM547_RS14530 (KM547_14470) sucD 3331594..3332466 (-) 873 WP_053838002.1 succinate--CoA ligase subunit alpha -
  KM547_RS14535 (KM547_14475) sucC 3332490..3333653 (-) 1164 WP_053833739.1 ADP-forming succinate--CoA ligase subunit beta -
  KM547_RS14540 (KM547_14480) - 3333897..3335510 (+) 1614 WP_053838003.1 sensor histidine kinase -
  KM547_RS14545 (KM547_14485) pilR 3335585..3336973 (+) 1389 WP_003477091.1 sigma-54-dependent transcriptional regulator Regulator
  KM547_RS14550 (KM547_14490) - 3337138..3337434 (+) 297 WP_053833736.1 type II toxin-antitoxin system RelE/ParE family toxin -
  KM547_RS14555 (KM547_14495) - 3337437..3337730 (+) 294 WP_009580422.1 addiction module antidote protein -
  KM547_RS14560 (KM547_14500) pilB 3337758..3339494 (-) 1737 WP_053838004.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KM547_RS14565 (KM547_14505) - 3339701..3339991 (+) 291 WP_009580418.1 nucleotidyltransferase family protein -
  KM547_RS14570 (KM547_14510) - 3339988..3340359 (+) 372 WP_053838005.1 DUF86 domain-containing protein -
  KM547_RS14575 (KM547_14515) - 3340495..3341052 (+) 558 WP_053838006.1 transposase -
  KM547_RS14580 (KM547_14520) - 3341286..3341735 (-) 450 WP_053838007.1 pilin -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49799.21 Da        Isoelectric Point: 6.5828

>NTDB_id=574044 KM547_RS14545 WP_003477091.1 3335585..3336973(+) (pilR) [Xanthomonas translucens pv. phlei strain LMG 730]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDLHVLRGLVKHALELNNSERAAPPAPPPEQASRLLGASAAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLAMQVKLLRAIQEKSVRPVGASIEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRDRGGDLP
QLAAAILARLAKSHGRATPLLSPSALDALNRYAFPGNVRELENILERALAMAEDDQISAADLHLPQPGNSARAAAEATPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=574044 KM547_RS14545 WP_003477091.1 3335585..3336973(+) (pilR) [Xanthomonas translucens pv. phlei strain LMG 730]
ATGAACGAAACTCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCGAGCAATCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACCCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGATCTGGCGGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACCTGCACGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACAGCGAACGCGCCGCGCCGCCGGCACCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGCCTCGGCGGCGATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAGTCCGGCGTCGGCAAGGAACTGGTCGCGCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACCAGGCCGGCCTGTTCCAGGCCGCACACGGCGGCACCCTGTTCCTGGAC
GAAGTGGCCGAGTTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGTGCGCCCGGTCGGCGC
CTCGATCGAGGTGCCCACCGACGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGACCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCACGGCTGGCCAAGAGCCATGGCCGGGCCACCCCGCTGCTGTCGCCGTCGGCGCTGGA
CGCGCTGAACCGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCCTGGCAATGGCAGAAG
ACGACCAGATCAGCGCCGCCGACCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGCCGCGGCCGAAGCCACGCCCGCG
CTGCCGCCAGGCGTGGTCGACATCGACCCGACCTCCTCGGCCCTGCCCTCCTACATCGAACAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGTGCGCTGCGCT
ACAAGCTCAAGAAGTTGGGAATGGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3TL96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.527

99.351

0.621
  pilR Acinetobacter baumannii strain A118

47.084

100

0.472