Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KM539_RS15545 Genome accession   NZ_CP076250
Coordinates   3582618..3584006 (+) Length   462 a.a.
NCBI ID   WP_053839881.1    Uniprot ID   A0A0K2ZGK7
Organism   Xanthomonas translucens pv. poae strain LMG 728     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3577618..3589006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM539_RS15530 (KM539_15495) sucD 3578623..3579495 (-) 873 WP_009580520.1 succinate--CoA ligase subunit alpha -
  KM539_RS15535 (KM539_15500) sucC 3579519..3580682 (-) 1164 WP_053833739.1 ADP-forming succinate--CoA ligase subunit beta -
  KM539_RS15540 (KM539_15505) - 3580924..3582543 (+) 1620 WP_053839882.1 sensor histidine kinase -
  KM539_RS15545 (KM539_15510) pilR 3582618..3584006 (+) 1389 WP_053839881.1 sigma-54-dependent transcriptional regulator Regulator
  KM539_RS15550 (KM539_15515) - 3584171..3584467 (+) 297 WP_053833736.1 type II toxin-antitoxin system RelE/ParE family toxin -
  KM539_RS15555 (KM539_15520) - 3584464..3584763 (+) 300 WP_237653908.1 addiction module antidote protein -
  KM539_RS15560 (KM539_15525) pilB 3584791..3586527 (-) 1737 WP_053839880.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KM539_RS15565 (KM539_15530) - 3586715..3587020 (+) 306 WP_237653910.1 hypothetical protein -
  KM539_RS15570 (KM539_15535) - 3587254..3587712 (-) 459 WP_053839879.1 pilin -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49799.21 Da        Isoelectric Point: 6.5828

>NTDB_id=574030 KM539_RS15545 WP_053839881.1 3582618..3584006(+) (pilR) [Xanthomonas translucens pv. poae strain LMG 728]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDLHVLRGLVKHALELNNSERAAPPAPPPEQASRLLGASAAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLAMQVKLLRAIQEKSVRPVGASIEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRDRGGDLP
QLAAAILARLTKSHGRATPLLSPSALDALNRYAFPGNVRELENILERALAMAEDDQISAADLHLPQPGNSARAAAEAAPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=574030 KM539_RS15545 WP_053839881.1 3582618..3584006(+) (pilR) [Xanthomonas translucens pv. poae strain LMG 728]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCGAGCAATCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGATCTGGCGGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACCTGCACGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAACTCAACAACAGCGAACGCGCCGCGCCGCCGGCACCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGCCTCGGCGGCGATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAGTCCGGCGTCGGCAAGGAGCTGGTCGCGCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTGGAC
GAAGTGGCCGAGCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGTGCGCCCGGTCGGCGC
CTCGATCGAAGTGCCCACCGACGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGACCGCGGCGGCGACCTGCCG
CAATTGGCCGCGGCGATCCTGGCACGGCTGACCAAGAGCCATGGCCGGGCCACCCCGCTGCTGTCGCCGTCGGCGCTGGA
CGCGCTGAACCGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCCTGGCAATGGCCGAAG
ACGACCAGATCAGCGCCGCCGACCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGCCGCGGCCGAAGCCGCGCCCGCG
CTGCCGCCCGGCGTGGTCGACATCGACCCGACCTCCTCAGCCCTGCCCTCCTACATCGAACAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGTGCGCTGCGCT
ACAAGCTCAAGAAGTTGGGAATGGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K2ZGK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.309

99.351

0.619
  pilR Acinetobacter baumannii strain A118

46.868

100

0.47