Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   MQG44_RS04355 Genome accession   NZ_CP093912
Coordinates   924741..926783 (-) Length   680 a.a.
NCBI ID   WP_005540197.1    Uniprot ID   A0A142FY57
Organism   Aggregatibacter actinomycetemcomitans strain 14R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 919741..931783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQG44_RS04340 - 921270..921680 (+) 411 WP_005540203.1 YhcB family protein -
  MQG44_RS04345 - 921871..923253 (+) 1383 WP_005540201.1 Do family serine endopeptidase -
  MQG44_RS04350 ompA 923444..924514 (-) 1071 WP_005540199.1 porin OmpA -
  MQG44_RS04355 uvrB 924741..926783 (-) 2043 WP_005540197.1 excinuclease ABC subunit UvrB Machinery gene
  MQG44_RS04365 zevB 927395..928426 (-) 1032 WP_005551275.1 zinc transporter permease subunit ZevB -
  MQG44_RS04370 zevA 928441..929073 (-) 633 WP_269194748.1 zinc transporter binding subunit ZevA -
  MQG44_RS04375 ettA 929485..931155 (+) 1671 WP_005594265.1 energy-dependent translational throttle protein EttA -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 77547.08 Da        Isoelectric Point: 5.2054

>NTDB_id=572602 MQG44_RS04355 WP_005540197.1 924741..926783(-) (uvrB) [Aggregatibacter actinomycetemcomitans strain 14R]
MSEKINTKPFILHSHFKPSGDQPQAIAKLAENLEDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMVLAPNKTLAAQLYA
EMKDFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYL
KMMLHLQQGAIINQRQILAKLAELQYTRNDQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDGEIERLSLFDPLTGSSF
GTVPRFTVYPKTHYVTPRERILDAIEKIKLELAQRREYFTKENKLLEEQRISQRTQFDIEMMNELGYCSGIENYSRYLSD
RNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSAT
PGPYELEKSGGEIIDQVVRPTGLLDPQIEIRPVSIQVDDLLSEARHRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRY
LHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGKAILYAD
NITKSMEKAITETNRRREKQAKYNEAQGIMPQALNKKVGELLDIGQGANQKAKANKQRGKTVAEPTALYTTLKSPKEYQQ
QIKKLEQQMYKFAQDLEFEKAAATRDQLQQLRESFMLSSE

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=572602 MQG44_RS04355 WP_005540197.1 924741..926783(-) (uvrB) [Aggregatibacter actinomycetemcomitans strain 14R]
ATGTCAGAAAAAATTAACACTAAACCTTTTATTCTTCATTCCCATTTCAAACCCTCCGGCGACCAACCCCAGGCCATCGC
AAAATTAGCCGAAAATTTAGAAGATGGCTTGGCACATCAAACCTTGCTTGGGGTAACAGGTTCAGGCAAAACCTTTACCA
TTGCCAATGTGATTGCGCAATTGAATCGCCCTGCGATGGTGTTGGCACCGAACAAAACCCTTGCCGCCCAACTTTATGCC
GAAATGAAGGATTTTTTCCCGGAAAATGCGGTGGAATATTTTGTTTCTTACTATGATTATTATCAGCCCGAAGCCTATGT
GCCGAGTAGCGATACTTTTATTGAGAAAGACGCGTCTATTAATGATCAAATTGAACAAATGCGACTTTCCGCCACAAAAT
CTTTCTTAGAACGGCGCGATACTATTGTAGTGGCGTCCGTGTCCGCTATTTATGGCTTAGGGGACCCCGATTCCTATTTA
AAAATGATGCTGCATTTGCAACAAGGCGCGATTATTAATCAGCGCCAAATCTTGGCAAAATTGGCAGAGTTGCAATATAC
CCGTAACGATCAGGCGTTTCAGCGCGGAACGTTCCGTGTGCGGGGAGAAATTATTGATATTTTCCCGGCGGAATCGGACG
ATCGAGCGGTACGTATCGAATTATTTGATGGTGAAATCGAACGCTTGAGTTTATTTGATCCGCTCACCGGCAGCAGCTTC
GGCACGGTGCCGCGCTTTACCGTTTATCCGAAAACCCACTATGTTACACCGCGTGAGCGAATTTTAGACGCCATCGAAAA
AATTAAACTGGAATTGGCGCAACGGCGGGAGTATTTCACTAAAGAAAATAAATTATTGGAAGAACAACGTATCAGCCAAC
GTACCCAATTTGATATTGAGATGATGAATGAACTCGGTTATTGCTCGGGCATTGAAAACTATTCCCGCTATTTATCAGAT
AGAAATGAGGGCGAACCGCCACCGACCTTATTTGATTATATGCCGTCTGACGCAATTTTGATTATTGACGAATCCCACGT
CACCGTGCCACAAATCGGTGGGATGTATCGCGGCGATCGCTCCCGTAAAGAAACCTTGGTGGAATATGGTTTTCGTCTGC
CTTCTGCGTTGGATAACCGTCCGTTACGTTTTGAAGAATTTGAACGTTTGGCACCGCAAACCATTTATGTTTCCGCCACA
CCGGGACCGTATGAACTGGAAAAATCCGGTGGGGAAATTATCGACCAAGTGGTGCGTCCGACAGGTTTGCTTGATCCGCA
AATTGAAATTCGCCCGGTATCTATTCAGGTGGATGATTTACTTTCCGAAGCACGCCATAGAGCGGATAAAAATGAACGCG
TTTTAGTGACGACATTAACGAAGAAAATGGCGGAAGATCTTACCGACTATTTAGATGAACATGGTATTCGCGTACGTTAT
TTGCATTCTGATATTGATACCGTCGAACGGGTGGAAATTATTCGTGATTTGCGCTTGGGGGAATTTGATGTTTTAGTCGG
CATTAACTTATTACGGGAAGGTTTAGATATTCCGGAAGTGTCTTTAGTGGCAATTTTAGATGCGGATAAAGAAGGTTTTT
TACGTTCCGAGCGTTCATTAATTCAAACGATCGGACGTGCTGCGCGAAATTTACACGGAAAAGCCATTTTGTATGCGGAT
AATATAACCAAATCAATGGAGAAAGCTATTACCGAAACCAATCGTCGGCGTGAGAAACAAGCAAAATATAATGAAGCACA
GGGCATTATGCCGCAGGCATTAAATAAAAAGGTAGGCGAGTTGTTAGATATCGGTCAGGGTGCCAATCAGAAAGCCAAAG
CCAATAAACAACGTGGAAAAACGGTGGCAGAACCGACCGCACTTTATACAACGCTGAAATCACCGAAAGAATATCAGCAA
CAAATTAAGAAACTGGAGCAGCAAATGTATAAATTTGCACAGGATTTGGAATTTGAGAAAGCTGCTGCAACGCGCGATCA
GTTACAACAATTACGGGAAAGTTTTATGTTATCAAGTGAGTAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(17-102)

UvrB/uvrC motif (UVR)

(640-673)

UvrB interaction domain (UvrB_inter)

(164-254)

Helicase conserved C-terminal domain (Helicase_C)

(446-549)

Ultra-violet resistance protein B (UvrB)

(557-598)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142FY57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.143

98.824

0.565
  uvrB Streptococcus pneumoniae R6

57.143

98.824

0.565
  uvrB Streptococcus pneumoniae D39

57.143

98.824

0.565