Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   MPJ80_RS12590 Genome accession   NZ_CP093548
Coordinates   2566371..2567030 (+) Length   219 a.a.
NCBI ID   WP_001221493.1    Uniprot ID   Q3YXL4
Organism   Escherichia coli strain YL03     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2561371..2572030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPJ80_RS12565 (MPJ80_12520) ygiS 2562654..2564261 (-) 1608 WP_001295629.1 ABC transporter substrate-binding protein -
  MPJ80_RS12570 (MPJ80_12525) mqsA 2564394..2564789 (-) 396 WP_000650107.1 type II toxin-antitoxin system antitoxin MqsA -
  MPJ80_RS12575 (MPJ80_12530) mqsR 2564791..2565087 (-) 297 WP_000415584.1 type II toxin-antitoxin system toxin MqsR -
  MPJ80_RS12580 (MPJ80_12535) ygiV 2565292..2565774 (-) 483 WP_000183505.1 AraC family transcriptional regulator -
  MPJ80_RS12585 (MPJ80_12540) ygiW 2565827..2566219 (-) 393 WP_000712658.1 OB fold stress tolerance protein YgiW -
  MPJ80_RS12590 (MPJ80_12545) ciaR 2566371..2567030 (+) 660 WP_001221493.1 quorum sensing response regulator transcription factor QseB Regulator
  MPJ80_RS12595 (MPJ80_12550) qseC 2567027..2568376 (+) 1350 WP_000673402.1 quorum sensing histidine kinase QseC -
  MPJ80_RS12600 (MPJ80_12555) ygiZ 2568422..2568754 (-) 333 WP_023149630.1 DUF2645 family protein -
  MPJ80_RS12605 (MPJ80_12560) mdaB 2569073..2569654 (+) 582 WP_000065430.1 NADPH:quinone oxidoreductase MdaB -
  MPJ80_RS12610 (MPJ80_12565) ygiN 2569685..2569999 (+) 315 WP_000958598.1 putative quinol monooxygenase -
  MPJ80_RS12615 (MPJ80_12570) parE 2570047..2571939 (-) 1893 WP_000195296.1 DNA topoisomerase IV subunit B -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24687.63 Da        Isoelectric Point: 6.9850

>NTDB_id=572432 MPJ80_RS12590 WP_001221493.1 2566371..2567030(+) (ciaR) [Escherichia coli strain YL03]
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

Nucleotide


Download         Length: 660 bp        

>NTDB_id=572432 MPJ80_RS12590 WP_001221493.1 2566371..2567030(+) (ciaR) [Escherichia coli strain YL03]
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTTTATAGCGCACCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCGGTACTGATCCTGACCGCG
CGCGATGCGCTGGCGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTT
ACACATTAGGTGAGAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-216)

Response regulator receiver domain (Response_reg)

(3-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3YXL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

38.326

100

0.397
  ciaR Streptococcus pneumoniae D39

38.326

100

0.397
  ciaR Streptococcus pneumoniae R6

38.326

100

0.397
  ciaR Streptococcus pneumoniae TIGR4

38.326

100

0.397
  ciaR Streptococcus mutans UA159

35.874

100

0.365