Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   MNY32_RS12220 Genome accession   NZ_CP093535
Coordinates   2655306..2657396 (-) Length   696 a.a.
NCBI ID   WP_011000963.1    Uniprot ID   Q8Y0N2
Organism   Ralstonia pseudosolanacearum strain SL1931     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2650306..2662396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNY32_RS12205 (MNY32_12205) cytR 2651004..2652047 (+) 1044 WP_011000966.1 LacI family DNA-binding transcriptional regulator Regulator
  MNY32_RS12210 (MNY32_12210) rbsK 2652084..2653031 (+) 948 WP_011000965.1 ribokinase -
  MNY32_RS12215 (MNY32_12215) - 2653057..2655147 (-) 2091 WP_058908682.1 site-specific recombinase -
  MNY32_RS12220 (MNY32_12220) uvrB 2655306..2657396 (-) 2091 WP_011000963.1 excinuclease ABC subunit UvrB Machinery gene
  MNY32_RS12225 (MNY32_12225) - 2657713..2658909 (+) 1197 WP_011000962.1 amino acid aminotransferase -
  MNY32_RS12230 (MNY32_12230) - 2659124..2660392 (+) 1269 WP_011000960.1 polyhydroxyalkanoate depolymerase -
  MNY32_RS12235 (MNY32_12235) - 2660459..2661178 (-) 720 WP_011000959.1 TetR/AcrR family transcriptional regulator -
  MNY32_RS12240 (MNY32_12240) rsxB 2661318..2662124 (+) 807 WP_028852848.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 696 a.a.        Molecular weight: 78663.37 Da        Isoelectric Point: 5.4230

>NTDB_id=572377 MNY32_RS12220 WP_011000963.1 2655306..2657396(-) (uvrB) [Ralstonia pseudosolanacearum strain SL1931]
MTDLSQVPSPYDESKFVTFDGSPFQLYQPYPPAGDQPEAIRQLVEGIGDGLSYQTLLGVTGSGKTYTMANVIAQAGRPAI
VFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSVNEHIEQMRLSATKSLLERRDVVIVAT
VSAIYGIGNPTEYHQMILTLRTGDKISQRDVIARLIAMQYTRNETDFQRGTFRVRGDTVDIFPAEHAEMAVRLELFDDEV
DSLQLFDPLTGRVRQKILRFTVYPSSHYVTPRETVLRAIGTIKAELRERLDFFYQENKLVEAQRLEQRTRFDLEMLQELG
FCKGIENYSRHLSGAQPGEPPPTLVDYLPSDALMFLDESHVLIGQLNGMYNGDRARKETLSAYGFRLPSALDNRPLKFAE
FEGKMRQVVFVSATPADYEKQRAGDEVVEQVVRPTGLVDPIIHVRPATTQVDDLLSEIHERVKAGERVLVTTLTKRMAEQ
LTEFLSENGVKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGR
AARNVNGTAILYGDRITESMKKAIGETERRRAKQIAHNEAHGITPRGVVKRIKDIIDGVYNVDDARAELKAAQDAAKYED
MSEKQVGKEIKRLEKQMLDHAKNLEFEKAAAVRDQLAKLKSQVFGASGEDHIVPAA

Nucleotide


Download         Length: 2091 bp        

>NTDB_id=572377 MNY32_RS12220 WP_011000963.1 2655306..2657396(-) (uvrB) [Ralstonia pseudosolanacearum strain SL1931]
ATGACCGACCTCAGCCAAGTCCCCAGCCCGTACGACGAGTCGAAGTTCGTCACATTCGACGGCTCGCCGTTCCAGCTGTA
TCAGCCGTATCCGCCCGCCGGCGACCAGCCCGAGGCGATCCGCCAACTGGTCGAGGGCATCGGTGACGGCCTGTCGTACC
AGACGCTGCTGGGCGTGACGGGCTCGGGCAAGACCTACACGATGGCCAACGTGATCGCACAGGCGGGGCGGCCCGCGATC
GTGTTCGCGCCCAACAAGACGTTGGCGGCGCAACTGTATTCGGAGTTCCGCGAGTTCTTCCCGCGCAATGCGGTCGAGTA
CTTCGTCTCGTACTACGACTACTACCAGCCGGAAGCGTACGTGCCGCAGCGCGACCTGTTCATCGAGAAAGACTCGTCGG
TCAACGAGCATATCGAGCAGATGCGGCTGTCGGCCACCAAGAGCCTGCTGGAGCGCCGCGACGTGGTGATCGTGGCGACC
GTGTCGGCCATCTACGGCATCGGCAACCCGACCGAATACCACCAGATGATCCTGACGCTGCGCACTGGCGACAAGATCAG
CCAGCGCGACGTGATCGCGCGCCTGATCGCCATGCAGTACACGCGCAACGAGACGGATTTTCAGCGCGGCACCTTCCGCG
TGCGCGGCGACACCGTCGACATCTTTCCCGCCGAGCACGCCGAGATGGCGGTGCGGCTGGAGCTGTTCGACGACGAGGTC
GATTCGCTGCAGCTGTTCGATCCGCTCACCGGGCGCGTGCGGCAGAAGATCCTGCGCTTCACGGTGTACCCGTCGAGCCA
CTACGTGACGCCGCGCGAGACCGTGTTGCGCGCCATCGGGACCATCAAGGCCGAGCTGCGCGAGCGGCTGGATTTCTTCT
ACCAGGAGAACAAGCTGGTCGAGGCGCAGCGCCTGGAGCAGCGCACGCGCTTCGACCTGGAGATGCTGCAGGAGCTGGGC
TTCTGCAAGGGCATCGAGAACTATTCGCGGCACCTGTCCGGCGCCCAGCCGGGCGAGCCGCCTCCGACCCTGGTCGACTA
CCTGCCGTCCGACGCGCTGATGTTCCTGGACGAGTCGCACGTGCTGATCGGCCAGCTCAACGGCATGTACAACGGCGACC
GCGCGCGCAAGGAGACGCTGTCCGCGTATGGCTTCCGCCTGCCGTCCGCGCTGGACAACCGGCCGCTGAAGTTCGCCGAG
TTCGAGGGCAAGATGCGGCAGGTGGTTTTCGTGTCCGCCACGCCGGCCGATTACGAGAAGCAGCGCGCCGGCGACGAGGT
GGTCGAGCAGGTGGTGCGGCCCACGGGCCTGGTCGATCCGATCATCCACGTGCGGCCGGCCACCACGCAGGTGGACGACC
TGCTGTCGGAGATCCACGAGCGCGTCAAGGCCGGCGAGCGCGTGCTGGTCACCACGCTCACCAAGCGCATGGCCGAGCAG
CTGACCGAGTTCCTGTCGGAAAACGGCGTCAAGGTCCGCTACCTGCACTCGGACATCGACACGGTCGAGCGCGTGGAGAT
CATCCGCGACCTGCGGCTGGGCACCTTCGACGTGCTGGTCGGCATCAACCTGCTGCGCGAGGGGCTGGACATTCCCGAGG
TGTCGCTGGTGGCCATCCTCGACGCCGACAAGGAAGGCTTCCTGCGCGCCGAGCGCTCGCTGATCCAGACCATCGGCCGC
GCCGCGCGCAACGTCAACGGCACCGCCATCCTCTATGGGGATCGCATCACCGAGTCGATGAAGAAGGCCATTGGCGAGAC
CGAGCGGCGCCGCGCCAAGCAGATCGCCCACAACGAGGCCCATGGCATCACGCCGCGCGGCGTGGTCAAGCGCATCAAGG
ACATCATTGACGGCGTGTACAACGTCGACGATGCGCGCGCGGAGCTGAAGGCCGCGCAGGATGCCGCCAAGTACGAAGAC
ATGAGCGAGAAGCAGGTCGGCAAGGAAATCAAGCGTCTCGAAAAGCAGATGCTCGACCACGCCAAGAACCTGGAATTCGA
GAAGGCGGCCGCGGTGCGCGACCAGTTGGCCAAGCTCAAGTCGCAGGTCTTCGGGGCCAGCGGCGAAGACCATATCGTGC
CGGCGGCCTGA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(36-157)

Ultra-violet resistance protein B (UvrB)

(571-613)

Helicase conserved C-terminal domain (Helicase_C)

(454-563)

UvrB/uvrC motif (UVR)

(648-682)

UvrB interaction domain (UvrB_inter)

(178-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y0N2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.798

95.115

0.54
  uvrB Streptococcus pneumoniae R6

56.647

95.115

0.539
  uvrB Streptococcus pneumoniae D39

56.647

95.115

0.539