Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KME82_RS20055 Genome accession   NZ_CP076103
Coordinates   4822011..4823420 (+) Length   469 a.a.
NCBI ID   WP_215495574.1    Uniprot ID   -
Organism   Lysobacter capsici strain NF87_2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4817011..4828420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KME82_RS20030 (KME82_20030) - 4817200..4817496 (-) 297 WP_215495571.1 type II toxin-antitoxin system RelE/ParE family toxin -
  KME82_RS20035 (KME82_20035) - 4817493..4817783 (-) 291 WP_215495572.1 ribbon-helix-helix domain-containing protein -
  KME82_RS20040 (KME82_20040) sucD 4817925..4818800 (-) 876 WP_036104545.1 succinate--CoA ligase subunit alpha -
  KME82_RS20045 (KME82_20045) sucC 4818813..4819979 (-) 1167 WP_036104548.1 ADP-forming succinate--CoA ligase subunit beta -
  KME82_RS20050 (KME82_20050) - 4820300..4821925 (+) 1626 WP_215495573.1 ATP-binding protein -
  KME82_RS20055 (KME82_20055) pilR 4822011..4823420 (+) 1410 WP_215495574.1 sigma-54 dependent transcriptional regulator Regulator
  KME82_RS20060 (KME82_20060) pilA2 4823968..4824399 (+) 432 WP_215495575.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  KME82_RS20065 (KME82_20065) pilA2 4824969..4825382 (+) 414 WP_215495576.1 pilin Machinery gene
  KME82_RS20070 (KME82_20070) - 4825492..4827384 (+) 1893 WP_215495577.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 50745.15 Da        Isoelectric Point: 6.9165

>NTDB_id=571842 KME82_RS20055 WP_215495574.1 4822011..4823420(+) (pilR) [Lysobacter capsici strain NF87_2]
MAETRSALVVDDERDIRELLVMTLGRMGLRCDTASGLGEARSQLLRNSYDLCLTDMRLPDGSGMDLIAEISQKYPNTPVA
MITAFGNVEAAVDALKAGAFDFVAKPVDLAVLRDLVRHALELNDTRRSASEAVGSRLYGESPAMIKLRQTIGKVARSQAP
VYIAGESGVGKELVARTIHSEGGRADGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAADGGTLFLDEVAE
LPLPMQVKLLRAIQEKSIRPVGAQAELVVDVRILSATHKDLAALVADGRFRQDLYYRINVIELRVPPLRERLDDLPGLAS
KILHRLAGNQGRPVPRLGEDALDALRAYGFPGNVRELENILERALALAEGEVLNASDLRLPRLSTQPPPLPAHATHAGGA
SPQPGAVDPRTLNPRDTATSALPSYIEEIERAAIQQALQENRYNKTRTAAALGITFRALRYKLKKLGID

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=571842 KME82_RS20055 WP_215495574.1 4822011..4823420(+) (pilR) [Lysobacter capsici strain NF87_2]
ATGGCTGAAACACGTAGTGCATTGGTAGTCGACGACGAGCGCGATATTCGCGAGCTGCTCGTCATGACCTTGGGTCGGAT
GGGCCTGCGTTGCGACACCGCGTCGGGCCTCGGCGAGGCTCGCAGCCAGCTGCTGCGCAACAGTTACGACTTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCTCGGGCATGGACCTGATCGCCGAGATCAGCCAGAAGTATCCGAACACTCCGGTGGCG
ATGATCACCGCCTTCGGCAACGTCGAAGCCGCGGTCGACGCGCTCAAGGCCGGCGCCTTCGATTTCGTCGCCAAACCGGT
CGACCTGGCGGTGCTGCGCGATCTGGTGCGGCACGCGCTCGAACTCAACGACACCCGCCGCAGCGCCAGCGAAGCGGTCG
GTTCGCGCCTGTACGGCGAATCGCCGGCGATGATCAAGTTGCGCCAGACCATCGGCAAGGTCGCGCGCAGCCAGGCGCCG
GTGTACATCGCCGGCGAGTCCGGCGTCGGCAAGGAACTGGTCGCGCGCACCATTCATTCCGAAGGCGGCCGCGCCGATGG
CCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCT
TCACCGGCGCGCACGCCGACAAGCCCGGCCTGTTCCAGGCCGCCGACGGCGGCACCTTGTTCCTCGACGAAGTCGCCGAG
CTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGATCCGGCCGGTCGGCGCGCAAGCCGAACT
GGTGGTCGACGTGCGCATTCTCTCGGCGACCCACAAGGACCTCGCCGCGCTGGTCGCCGACGGCCGCTTCCGCCAGGACC
TTTACTACCGCATCAACGTCATCGAGCTGCGCGTGCCGCCGCTGCGCGAGCGGCTCGACGACTTGCCCGGCCTGGCCAGC
AAGATCCTGCACCGCCTCGCCGGCAACCAGGGCCGGCCGGTGCCGCGCCTAGGCGAGGACGCGCTCGACGCGCTGCGCGC
CTACGGTTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGGCGAAGTGCTCA
ACGCCAGCGACCTGCGCCTGCCGCGCCTGTCGACCCAGCCGCCGCCGCTGCCGGCCCACGCGACCCACGCCGGCGGCGCA
TCGCCGCAACCCGGCGCCGTCGACCCGCGCACCCTCAACCCGCGCGACACCGCGACCAGCGCCCTGCCCTCGTACATCGA
GGAAATCGAGCGCGCCGCGATCCAGCAGGCGCTGCAGGAAAACCGCTACAACAAGACCCGCACCGCCGCGGCCCTGGGCA
TCACCTTCCGCGCGCTGCGCTACAAGCTCAAGAAGCTCGGTATCGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(138-303)

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(426-466)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.09

99.36

0.627
  pilR Acinetobacter baumannii strain A118

48

100

0.486