Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   KH238_RS15070 Genome accession   NZ_CP076045
Coordinates   3110289..3110978 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain VCN56     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3105289..3115978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH238_RS15035 (KH238_15035) - 3105486..3105968 (-) 483 WP_003151394.1 flagellar protein FlgN -
  KH238_RS15040 (KH238_15040) flgM 3105983..3106249 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  KH238_RS15045 (KH238_15045) - 3106319..3106738 (-) 420 WP_007407479.1 TIGR03826 family flagellar region protein -
  KH238_RS15050 (KH238_15050) comFC 3106812..3107501 (-) 690 WP_197061611.1 phosphoribosyltransferase family protein Machinery gene
  KH238_RS15055 (KH238_15055) - 3107507..3107791 (-) 285 WP_007407481.1 competence protein ComFB -
  KH238_RS15060 (KH238_15060) comFA 3107849..3109234 (-) 1386 WP_007407482.1 DEAD/DEAH box helicase Machinery gene
  KH238_RS15065 (KH238_15065) - 3109343..3110191 (-) 849 WP_007407483.1 DegV family protein -
  KH238_RS15070 (KH238_15070) degU 3110289..3110978 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KH238_RS15075 (KH238_15075) degS 3111055..3112218 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  KH238_RS15080 (KH238_15080) - 3112441..3113088 (+) 648 WP_007407485.1 YigZ family protein -
  KH238_RS15085 (KH238_15085) - 3113093..3114313 (+) 1221 WP_032867080.1 LCP family protein -
  KH238_RS15090 (KH238_15090) - 3114412..3115488 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=571637 KH238_RS15070 WP_003219701.1 3110289..3110978(-) (degU) [Bacillus velezensis strain VCN56]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=571637 KH238_RS15070 WP_003219701.1 3110289..3110978(-) (degU) [Bacillus velezensis strain VCN56]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1