Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   KH238_RS15060 Genome accession   NZ_CP076045
Coordinates   3107849..3109234 (-) Length   461 a.a.
NCBI ID   WP_007407482.1    Uniprot ID   -
Organism   Bacillus velezensis strain VCN56     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3102849..3114234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH238_RS15025 (KH238_15025) flgL 3103024..3103941 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  KH238_RS15030 (KH238_15030) flgK 3103953..3105470 (-) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  KH238_RS15035 (KH238_15035) - 3105486..3105968 (-) 483 WP_003151394.1 flagellar protein FlgN -
  KH238_RS15040 (KH238_15040) flgM 3105983..3106249 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  KH238_RS15045 (KH238_15045) - 3106319..3106738 (-) 420 WP_007407479.1 TIGR03826 family flagellar region protein -
  KH238_RS15050 (KH238_15050) comFC 3106812..3107501 (-) 690 WP_197061611.1 phosphoribosyltransferase family protein Machinery gene
  KH238_RS15055 (KH238_15055) - 3107507..3107791 (-) 285 WP_007407481.1 competence protein ComFB -
  KH238_RS15060 (KH238_15060) comFA 3107849..3109234 (-) 1386 WP_007407482.1 DEAD/DEAH box helicase Machinery gene
  KH238_RS15065 (KH238_15065) - 3109343..3110191 (-) 849 WP_007407483.1 DegV family protein -
  KH238_RS15070 (KH238_15070) degU 3110289..3110978 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KH238_RS15075 (KH238_15075) degS 3111055..3112218 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  KH238_RS15080 (KH238_15080) - 3112441..3113088 (+) 648 WP_007407485.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52635.04 Da        Isoelectric Point: 10.2284

>NTDB_id=571636 KH238_RS15060 WP_007407482.1 3107849..3109234(-) (comFA) [Bacillus velezensis strain VCN56]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVVMGRADELTSLYSWNQAHENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=571636 KH238_RS15060 WP_007407482.1 3107849..3109234(-) (comFA) [Bacillus velezensis strain VCN56]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGACCAGCGCATTAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCGTGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCATGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACCCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623