Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   KI239_RS08175 Genome accession   NZ_CP076028
Coordinates   1691731..1692417 (-) Length   228 a.a.
NCBI ID   WP_001788928.1    Uniprot ID   -
Organism   Staphylococcus sp. MZ8     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1686731..1697417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI239_RS08155 (KI239_08155) rpsT 1687654..1687905 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  KI239_RS08160 (KI239_08160) holA 1687950..1688924 (-) 975 WP_001282561.1 DNA polymerase III subunit delta -
  KI239_RS08165 (KI239_08165) comEC 1688981..1691173 (-) 2193 WP_214958247.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KI239_RS08170 (KI239_08170) - 1691178..1691639 (-) 462 WP_000439693.1 ComE operon protein 2 -
  KI239_RS08175 (KI239_08175) comEA 1691731..1692417 (-) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  KI239_RS08180 (KI239_08180) - 1692457..1693173 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  KI239_RS08185 (KI239_08185) rsfS 1693176..1693529 (-) 354 WP_001088020.1 ribosome silencing factor -
  KI239_RS08190 (KI239_08190) yqeK 1693530..1694114 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  KI239_RS08195 (KI239_08195) nadD 1694104..1694673 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  KI239_RS08200 (KI239_08200) yhbY 1694676..1694966 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  KI239_RS08205 (KI239_08205) aroE 1694970..1695776 (-) 807 WP_214958248.1 shikimate dehydrogenase -
  KI239_RS08210 (KI239_08210) yqeH 1695790..1696890 (-) 1101 WP_001280138.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25888.59 Da        Isoelectric Point: 9.6751

>NTDB_id=571512 KI239_RS08175 WP_001788928.1 1691731..1692417(-) (comEA) [Staphylococcus sp. MZ8]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=571512 KI239_RS08175 WP_001788928.1 1691731..1692417(-) (comEA) [Staphylococcus sp. MZ8]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

99.561

0.996
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969