Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   KI239_RS08165 Genome accession   NZ_CP076028
Coordinates   1688981..1691173 (-) Length   730 a.a.
NCBI ID   WP_214958247.1    Uniprot ID   -
Organism   Staphylococcus sp. MZ8     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1683981..1696173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI239_RS08150 (KI239_08150) lepA 1685485..1687308 (-) 1824 WP_000368345.1 translation elongation factor 4 -
  KI239_RS08155 (KI239_08155) rpsT 1687654..1687905 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  KI239_RS08160 (KI239_08160) holA 1687950..1688924 (-) 975 WP_001282561.1 DNA polymerase III subunit delta -
  KI239_RS08165 (KI239_08165) comEC 1688981..1691173 (-) 2193 WP_214958247.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KI239_RS08170 (KI239_08170) - 1691178..1691639 (-) 462 WP_000439693.1 ComE operon protein 2 -
  KI239_RS08175 (KI239_08175) comEA 1691731..1692417 (-) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  KI239_RS08180 (KI239_08180) - 1692457..1693173 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  KI239_RS08185 (KI239_08185) rsfS 1693176..1693529 (-) 354 WP_001088020.1 ribosome silencing factor -
  KI239_RS08190 (KI239_08190) yqeK 1693530..1694114 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  KI239_RS08195 (KI239_08195) nadD 1694104..1694673 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  KI239_RS08200 (KI239_08200) yhbY 1694676..1694966 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  KI239_RS08205 (KI239_08205) aroE 1694970..1695776 (-) 807 WP_214958248.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 84557.59 Da        Isoelectric Point: 10.0650

>NTDB_id=571510 KI239_RS08165 WP_214958247.1 1688981..1691173(-) (comEC) [Staphylococcus sp. MZ8]
MLYVALSMIVGVLWNSSKVLSTFLFILLLYITYRKNKIVYAPISLFLIIFSSWYLHYSQQAIFNYINYIERNSQFNERAQ
VIQIQRQGSDTYKGRLSLKNEIYPFFLTNKKNFDLKKIESRNCIVKGQFKVNDNKFVTLKLQSIVVQSCLESNRSNLIEK
HKQFIMNRIYDSGIKFPDRIMALITGDVKEINEQFKERVKEIGIYHLLAVSGSHIAAIVFLIYKPLKRLNLPLFVIKGIT
IIVLALFAQYTNYAPSAVRAIIMTTLVLLITKQIKIKGIQLLAFAFIIMFILNPLVVYDIGFQFSFIISFFIMLLFPFLQ
QLSKLQSLFIITFIAQLASFIVAIPNFHQLQWVGFLSNLIFVPYYSIILFPLSILFFITSHFIVGLTPLNYLVDLSFNFH
DWLLDLFTRIKQSHFSVPKFNDWIFIISVYYIFWLLAKRKYILVTVWTIIILTLLITFPTNSHHKITMLNVGQGDSILYE
GGKNQNVLIDTGGKVIDDTKQPSYSISKYHILPTLNERGINELEYLILTHPHNDHIGEVEYIISHIKIKHIVIYNKGYSS
NTLMLLSKLSHKYNIKLMDVRQVSSFKLGDSSFLFFDSFIPNSRDKNEYSIITMITYQNKKVLLMGDASKNNESLLLKKY
NLPEIDILKVGHHVSKTSSSKEFIEMIKPKISLISSGKNNMYHLPNIEVVKRLQRIRSRIYNSQQNGQVTIDLDDNLKVD
SNSYGNASGL

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=571510 KI239_RS08165 WP_214958247.1 1688981..1691173(-) (comEC) [Staphylococcus sp. MZ8]
TTGCTGTATGTCGCGTTATCAATGATTGTAGGAGTGCTTTGGAATTCTAGCAAAGTGCTCTCTACATTTCTTTTCATTTT
ACTTTTGTATATTACTTATCGTAAAAATAAAATCGTTTATGCCCCTATTTCTCTCTTTTTAATCATTTTCTCCTCATGGT
ATTTACATTATTCACAACAAGCAATATTTAATTATATCAATTATATTGAACGTAATTCTCAGTTTAATGAGCGTGCTCAA
GTAATCCAAATTCAACGTCAAGGTAGTGACACATATAAAGGTAGGTTGAGTTTAAAAAATGAAATATATCCTTTCTTTTT
AACAAATAAAAAGAATTTTGATTTAAAGAAAATTGAAAGTCGTAATTGTATTGTTAAAGGACAATTCAAAGTTAATGACA
ATAAGTTTGTAACTCTTAAATTACAAAGTATAGTTGTACAAAGCTGCCTAGAATCGAACCGGTCTAATTTAATTGAGAAA
CATAAACAGTTTATAATGAATCGAATTTATGATTCGGGTATTAAGTTTCCGGATCGTATTATGGCATTGATTACTGGTGA
CGTAAAAGAAATTAATGAGCAATTTAAGGAACGTGTTAAAGAGATAGGTATATATCATTTGCTGGCAGTTAGTGGCTCGC
ATATAGCTGCAATTGTATTCTTAATTTACAAACCTTTAAAACGATTAAATTTACCTTTATTTGTCATTAAAGGAATTACA
ATCATTGTATTAGCTTTATTTGCTCAATACACAAATTATGCACCTAGTGCTGTAAGAGCTATAATAATGACAACTCTTGT
ACTGCTTATTACTAAGCAAATTAAAATAAAGGGTATTCAGCTATTAGCATTTGCATTTATAATTATGTTTATTTTAAATC
CACTAGTTGTTTATGATATTGGATTTCAATTTTCATTCATCATTTCATTTTTTATTATGCTACTTTTTCCTTTTTTACAG
CAATTGTCAAAGTTACAATCATTATTCATAATTACGTTTATTGCACAATTAGCTTCATTTATCGTTGCCATTCCAAACTT
TCATCAACTTCAATGGGTGGGATTTTTATCTAATTTGATTTTTGTACCGTACTATTCGATTATATTGTTTCCGCTATCTA
TTTTATTCTTTATTACAAGTCATTTTATTGTGGGATTAACGCCGCTAAATTACTTGGTTGACCTAAGTTTTAATTTTCAT
GACTGGTTACTAGACCTATTCACAAGAATCAAGCAATCACATTTTTCTGTTCCCAAGTTTAATGATTGGATATTTATAAT
TTCTGTTTATTACATATTTTGGTTATTGGCTAAACGTAAATATATATTGGTTACGGTTTGGACTATAATTATTCTGACAT
TATTAATAACGTTTCCAACAAATTCACATCACAAAATTACAATGTTAAATGTGGGGCAGGGAGACAGTATTTTATATGAA
GGCGGTAAGAACCAAAATGTCTTGATTGATACAGGTGGGAAAGTGATTGATGATACTAAACAACCTAGTTATTCAATTTC
TAAATATCATATTTTACCAACGCTAAATGAAAGAGGGATAAATGAATTAGAGTATCTAATTTTAACACATCCACACAATG
ACCATATTGGTGAAGTGGAATATATTATTAGTCATATTAAAATTAAACATATAGTGATATACAATAAGGGATATAGTAGT
AATACATTGATGTTATTATCGAAATTAAGCCATAAGTACAACATTAAACTTATGGATGTAAGACAAGTTAGTAGTTTTAA
ACTTGGAGATAGTAGTTTTCTATTTTTTGATAGTTTTATTCCAAATAGCCGAGATAAAAATGAGTATTCGATTATTACTA
TGATTACATATCAAAATAAAAAAGTTTTATTAATGGGCGATGCTAGTAAAAATAATGAATCTTTACTACTAAAAAAATAT
AACTTGCCGGAGATTGATATTTTAAAAGTAGGACATCATGTGAGCAAGACAAGTAGTTCTAAAGAATTTATAGAGATGAT
TAAGCCTAAAATAAGTTTGATTTCTTCTGGGAAGAACAATATGTATCATCTTCCTAATATAGAAGTTGTTAAACGATTGC
AAAGGATTCGCAGTCGCATTTACAATAGTCAACAAAACGGTCAAGTTACAATTGACTTAGATGATAATTTAAAAGTTGAT
TCAAACTCTTATGGAAATGCAAGTGGTTTATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(471-676)

Competence protein (Competence)

(183-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Staphylococcus aureus MW2

99.045

100

0.995
  comEC Staphylococcus aureus N315

98.636

100

0.99