Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   MNV48_RS05605 Genome accession   NZ_CP093221
Coordinates   1154978..1155568 (+) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain ER2683     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1149978..1160568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNV48_RS05570 (MNV48_05570) yidF 1150093..1150590 (+) 498 WP_000148061.1 radical SAM protein -
  MNV48_RS05575 (MNV48_05575) emrD 1150598..1151782 (-) 1185 WP_000828746.1 multidrug efflux MFS transporter EmrD -
  MNV48_RS05580 (MNV48_05580) ysdE 1151864..1151938 (+) 75 WP_211180519.1 protein YsdE -
  MNV48_RS05585 (MNV48_05585) tisB 1152062..1152151 (-) 90 WP_001054909.1 type I toxin-antitoxin system toxin TisB -
  MNV48_RS05590 (MNV48_05590) ivbL 1152716..1152814 (+) 99 WP_001300753.1 ilvB operon leader peptide IvbL -
  MNV48_RS05595 (MNV48_05595) ilvB 1152920..1154608 (+) 1689 WP_000168475.1 acetolactate synthase large subunit -
  MNV48_RS05600 (MNV48_05600) ilvN 1154612..1154902 (+) 291 WP_001181706.1 acetolactate synthase small subunit -
  MNV48_RS05605 (MNV48_05605) letA 1154978..1155568 (+) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  MNV48_RS05610 (MNV48_05610) uhpB 1155568..1157070 (+) 1503 WP_001295243.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  MNV48_RS05615 (MNV48_05615) uhpC 1157080..1158399 (+) 1320 WP_000936566.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  MNV48_RS05620 (MNV48_05620) uhpT 1158537..1159928 (+) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=570612 MNV48_RS05605 WP_000633668.1 1154978..1155568(+) (letA) [Escherichia coli strain ER2683]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=570612 MNV48_RS05605 WP_000633668.1 1154978..1155568(+) (letA) [Escherichia coli strain ER2683]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGCTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACGATTATGCTCTCCGTT
CACGACAGTCCTGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCACGCGGCTTTCTTTCCAAACGCTGTAGCCCGGATGA
ACTCATTGCTGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GTCAGGACCCGCTAACCAAACGTGAACGCCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTAGA
GCTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378