Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   G8O97_RS11130 Genome accession   NZ_CP075874
Coordinates   2209580..2210062 (+) Length   160 a.a.
NCBI ID   WP_003722552.1    Uniprot ID   A0A3T2EU60
Organism   Listeria monocytogenes strain 1BR5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2206867..2239006 2209580..2210062 within 0


Gene organization within MGE regions


Location: 2206867..2239006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8O97_RS11095 - 2207190..2207387 (+) 198 WP_003722558.1 hypothetical protein -
  G8O97_RS11100 - 2207384..2207767 (+) 384 WP_209025654.1 YopX family protein -
  G8O97_RS11105 - 2207767..2208477 (+) 711 WP_023552257.1 hypothetical protein -
  G8O97_RS11110 - 2208490..2208678 (+) 189 WP_023552259.1 hypothetical protein -
  G8O97_RS11115 - 2208675..2209136 (+) 462 WP_023552261.1 hypothetical protein -
  G8O97_RS11120 - 2209133..2209300 (+) 168 WP_003722554.1 hypothetical protein -
  G8O97_RS11125 - 2209404..2209583 (+) 180 WP_003733878.1 hypothetical protein -
  G8O97_RS11130 ssbA 2209580..2210062 (+) 483 WP_003722552.1 single-stranded DNA-binding protein Machinery gene
  G8O97_RS11135 - 2210081..2210263 (+) 183 WP_209025655.1 hypothetical protein -
  G8O97_RS11140 - 2210280..2210750 (+) 471 WP_223196595.1 Holliday junction resolvase RecU -
  G8O97_RS11145 - 2210815..2211249 (+) 435 WP_025370640.1 ArpU family phage packaging/lysis transcriptional regulator -
  G8O97_RS11150 - 2211525..2211752 (+) 228 WP_023548498.1 hypothetical protein -
  G8O97_RS11155 terS 2211796..2212566 (+) 771 WP_061128877.1 phage terminase small subunit -
  G8O97_RS11160 - 2212505..2213824 (+) 1320 WP_038409838.1 PBSX family phage terminase large subunit -
  G8O97_RS11165 - 2213839..2215395 (+) 1557 WP_023548504.1 hypothetical protein -
  G8O97_RS11170 - 2215400..2216443 (+) 1044 WP_023548506.1 phage minor capsid protein -
  G8O97_RS11175 - 2216539..2217093 (+) 555 WP_003723788.1 hypothetical protein -
  G8O97_RS11180 - 2217116..2217988 (+) 873 WP_003723787.1 hypothetical protein -
  G8O97_RS11185 - 2218002..2218157 (+) 156 WP_003723786.1 hypothetical protein -
  G8O97_RS11190 - 2218158..2218511 (+) 354 WP_003723785.1 hypothetical protein -
  G8O97_RS11195 - 2218511..2218876 (+) 366 WP_003733695.1 hypothetical protein -
  G8O97_RS11200 - 2218866..2219183 (+) 318 WP_003733696.1 HK97 gp10 family phage protein -
  G8O97_RS11205 - 2219180..2219551 (+) 372 WP_003725064.1 hypothetical protein -
  G8O97_RS11210 - 2219556..2220245 (+) 690 WP_003733697.1 phage tail tube protein -
  G8O97_RS11215 - 2220301..2220732 (+) 432 WP_003733698.1 hypothetical protein -
  G8O97_RS11220 - 2220765..2221040 (+) 276 WP_003733699.1 Gp15 family bacteriophage protein -
  G8O97_RS11225 - 2221045..2225835 (+) 4791 WP_060587044.1 phage tail tape measure protein -
  G8O97_RS11230 - 2225832..2227400 (+) 1569 WP_023552439.1 distal tail protein Dit -
  G8O97_RS11235 - 2227413..2229578 (+) 2166 WP_023553771.1 phage tail spike protein -
  G8O97_RS11250 - 2233018..2233383 (+) 366 WP_003722523.1 Gp23 family protein -
  G8O97_RS11255 - 2233396..2233677 (+) 282 WP_023559373.1 holin -
  G8O97_RS11260 - 2233677..2234522 (+) 846 WP_214631466.1 DUF5776 domain-containing protein -
  G8O97_RS11265 - 2234563..2235351 (-) 789 WP_003733662.1 DUF3825 domain-containing protein -
  G8O97_RS11270 - 2235611..2236108 (-) 498 WP_003733661.1 AP2 domain-containing protein -
  G8O97_RS11275 acrIIA1 2236133..2236582 (-) 450 WP_003722518.1 anti-CRISPR protein AcrIIA1 -
  G8O97_RS11280 - 2236583..2236822 (-) 240 WP_227869347.1 hypothetical protein -
  G8O97_RS11290 - 2238773..2239006 (-) 234 WP_003731277.1 hypothetical protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17837.65 Da        Isoelectric Point: 4.9909

>NTDB_id=570484 G8O97_RS11130 WP_003722552.1 2209580..2210062(+) (ssbA) [Listeria monocytogenes strain 1BR5]
MMNRVVLVGRLTKDPDLRYTPAGVAVATFTLAVNRTFTNQNGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEDNDGKRVFVTEVVAESVQFLEPKNNNVEGATSNNYQNKANYSNNNQTSSYRADTSQKSDSFASEGKPIDINEDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=570484 G8O97_RS11130 WP_003722552.1 2209580..2210062(+) (ssbA) [Listeria monocytogenes strain 1BR5]
ATGATGAATCGTGTAGTACTTGTAGGACGATTAACAAAAGATCCGGATTTACGTTACACTCCAGCAGGCGTAGCAGTCGC
GACTTTTACATTAGCAGTAAATCGTACATTCACTAATCAAAACGGAGAACGAGAAGCAGATTTCATTAATTGTGTTGTTT
GGCGCAAACCAGCAGAAAACGTTGCTAATTTCTTGAAGAAAGGAAGCATGGCGGGCGTTGATGGACGTGTTCAAACTCGT
AATTATGAGGATAACGACGGTAAACGTGTTTTCGTTACTGAGGTAGTTGCTGAATCAGTTCAATTCTTAGAACCTAAAAA
TAACAACGTAGAAGGTGCTACATCGAATAATTACCAAAACAAGGCTAATTATTCAAATAACAATCAAACAAGCTCATATC
GAGCGGATACGAGTCAGAAGAGCGATTCATTTGCAAGTGAAGGTAAGCCGATTGATATTAATGAAGATGATTTGCCATTT
TGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3T2EU60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.116

100

0.7
  ssb Latilactobacillus sakei subsp. sakei 23K

55.294

100

0.587
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

66.25

0.419