Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   MMZ68_RS13175 Genome accession   NZ_CP093028
Coordinates   2730755..2731426 (+) Length   223 a.a.
NCBI ID   WP_034057076.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H05     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2725755..2736426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ68_RS13140 (MMZ68_13140) ppyR 2726228..2726485 (+) 258 WP_003090502.1 psl/pyoverdine operon transcriptional regulator PpyR -
  MMZ68_RS13145 (MMZ68_13145) - 2726472..2727665 (+) 1194 WP_019485833.1 NnrS family protein -
  MMZ68_RS13150 (MMZ68_13150) - 2727666..2727932 (-) 267 WP_003090500.1 DUF5329 domain-containing protein -
  MMZ68_RS13155 (MMZ68_13155) - 2727916..2728809 (-) 894 WP_019485832.1 hypothetical protein -
  MMZ68_RS13160 (MMZ68_13160) - 2728836..2729918 (-) 1083 WP_003143813.1 hypothetical protein -
  MMZ68_RS13165 (MMZ68_13165) - 2730133..2730441 (+) 309 WP_003090497.1 PepSY domain-containing protein -
  MMZ68_RS13170 (MMZ68_13170) - 2730441..2730755 (+) 315 WP_003097704.1 PepSY domain-containing protein -
  MMZ68_RS13175 (MMZ68_13175) ciaR 2730755..2731426 (+) 672 WP_034057076.1 two-component system response regulator CarR Regulator
  MMZ68_RS13180 (MMZ68_13180) carS 2731423..2732760 (+) 1338 WP_003097701.1 two-component system sensor histidine kinase CarS -
  MMZ68_RS13185 (MMZ68_13185) - 2732851..2733150 (+) 300 WP_015502793.1 hypothetical protein -
  MMZ68_RS34165 - 2733155..2733691 (-) 537 Protein_2612 methyl-accepting chemotaxis protein -
  MMZ68_RS34170 - 2734061..2735299 (-) 1239 Protein_2613 chemotaxis protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24775.28 Da        Isoelectric Point: 5.8440

>NTDB_id=569978 MMZ68_RS13175 WP_034057076.1 2730755..2731426(+) (ciaR) [Pseudomonas aeruginosa strain H05]
MRLLLVEDHVPLADELMASLTRQGYAVDWLADGRDAAVQGASEPYDLIILDLGLPGRPGLEILQEWRGLGLATPVLILTA
RGSWAERIDGLKAGADDYLTKPFHPEELALRIQALLRRAHGLANQSQLEAAGLRLDEQRQCVCLNCADVDLTAAEFRLLR
YFMLHPGQVLSKGHLAEHLYDGETERDSNVIEVHVNHLRRKLGREVIETRRGQGYRYAGVAAG

Nucleotide


Download         Length: 672 bp        

>NTDB_id=569978 MMZ68_RS13175 WP_034057076.1 2730755..2731426(+) (ciaR) [Pseudomonas aeruginosa strain H05]
ATGCGGTTGCTACTGGTTGAGGATCACGTTCCCCTGGCCGACGAACTGATGGCCAGCCTGACCCGCCAGGGCTACGCGGT
GGACTGGCTGGCCGACGGTCGCGACGCGGCGGTGCAGGGCGCCAGCGAGCCCTACGACCTGATCATCCTCGACCTCGGCC
TGCCCGGGCGTCCCGGCCTGGAGATACTCCAGGAGTGGCGTGGCCTGGGACTCGCGACTCCGGTGCTGATCCTCACCGCG
CGCGGTTCCTGGGCCGAACGCATCGATGGGCTCAAGGCCGGTGCCGACGACTACCTGACCAAGCCGTTCCATCCGGAAGA
GTTGGCCTTGCGCATCCAGGCCCTGTTGCGCCGCGCCCATGGGCTGGCCAACCAGAGCCAGCTGGAGGCCGCCGGGCTGC
GCCTGGACGAGCAGCGCCAGTGCGTGTGCCTGAACTGCGCCGACGTCGACCTGACCGCCGCCGAATTCCGCCTGCTGCGC
TATTTCATGCTGCACCCCGGCCAGGTCCTGTCCAAGGGGCACCTGGCCGAGCATCTGTACGACGGCGAGACCGAACGCGA
TTCCAACGTCATCGAGGTCCACGTCAACCACCTGCGGCGCAAGCTCGGCCGCGAGGTGATCGAGACCCGCCGTGGCCAGG
GCTACCGCTACGCCGGGGTGGCCGCCGGATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-216)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

37.273

98.655

0.368
  ciaR Streptococcus pneumoniae Rx1

37.273

98.655

0.368
  ciaR Streptococcus pneumoniae D39

37.273

98.655

0.368
  ciaR Streptococcus pneumoniae R6

37.273

98.655

0.368
  ciaR Streptococcus pneumoniae TIGR4

37.273

98.655

0.368