Detailed information
Bioinformatically predicted
Overview
| Name | comGD | Type | Machinery gene |
| Locus tag | ATE38_RS06040 | Genome accession | NZ_AP017377 |
| Coordinates | 1195794..1196240 (+) | Length | 148 a.a. |
| NCBI ID | WP_001790850.1 | Uniprot ID | Q2G2I7 |
| Organism | Staphylococcus aureus strain OC8 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1190794..1201240
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ATE38_RS06010 | - | 1191142..1191471 (+) | 330 | WP_001018871.1 | MTH1187 family thiamine-binding protein | - |
| ATE38_RS06015 | - | 1191468..1192091 (+) | 624 | WP_001223008.1 | MBL fold metallo-hydrolase | - |
| ATE38_RS06020 | comGA | 1192143..1193117 (+) | 975 | WP_000697228.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ATE38_RS06025 | comGB | 1193089..1194117 (+) | 1029 | WP_053015094.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ATE38_RS06030 | - | 1194203..1195375 (+) | 1173 | WP_000195429.1 | IS256-like element IS256 family transposase | - |
| ATE38_RS06035 | comGC | 1195505..1195816 (+) | 312 | WP_000472256.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ATE38_RS06040 | comGD | 1195794..1196240 (+) | 447 | WP_001790850.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| ATE38_RS06045 | comGE | 1196227..1196526 (+) | 300 | WP_000844413.1 | hypothetical protein | Machinery gene |
| ATE38_RS06050 | comGF | 1196444..1196941 (+) | 498 | WP_001789864.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| ATE38_RS06055 | - | 1197038..1197184 (+) | 147 | WP_001789879.1 | hypothetical protein | - |
| ATE38_RS06060 | - | 1197174..1197698 (+) | 525 | WP_001015117.1 | shikimate kinase | - |
| ATE38_RS06065 | gcvT | 1197857..1198948 (+) | 1092 | WP_000093349.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| ATE38_RS06070 | gcvPA | 1198968..1200314 (+) | 1347 | WP_000019687.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 17213.42 Da Isoelectric Point: 10.3682
>NTDB_id=56989 ATE38_RS06040 WP_001790850.1 1195794..1196240(+) (comGD) [Staphylococcus aureus strain OC8]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL
Nucleotide
Download Length: 447 bp
>NTDB_id=56989 ATE38_RS06040 WP_001790850.1 1195794..1196240(+) (comGD) [Staphylococcus aureus strain OC8]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGD | Staphylococcus aureus MW2 |
99.324 |
100 |
0.993 |
| comGD | Staphylococcus aureus N315 |
99.324 |
100 |
0.993 |