Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   ATE38_RS06025 Genome accession   NZ_AP017377
Coordinates   1193089..1194117 (+) Length   342 a.a.
NCBI ID   WP_053015094.1    Uniprot ID   -
Organism   Staphylococcus aureus strain OC8     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1188089..1199117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATE38_RS05995 - 1188512..1189975 (+) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -
  ATE38_RS06000 - 1189956..1190159 (+) 204 WP_000087561.1 YqgQ family protein -
  ATE38_RS06005 - 1190156..1191142 (+) 987 WP_000161314.1 ROK family glucokinase -
  ATE38_RS06010 - 1191142..1191471 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  ATE38_RS06015 - 1191468..1192091 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  ATE38_RS06020 comGA 1192143..1193117 (+) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  ATE38_RS06025 comGB 1193089..1194117 (+) 1029 WP_053015094.1 competence type IV pilus assembly protein ComGB Machinery gene
  ATE38_RS06030 - 1194203..1195375 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  ATE38_RS06035 comGC 1195505..1195816 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  ATE38_RS06040 comGD 1195794..1196240 (+) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  ATE38_RS06045 comGE 1196227..1196526 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  ATE38_RS06050 comGF 1196444..1196941 (+) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  ATE38_RS06055 - 1197038..1197184 (+) 147 WP_001789879.1 hypothetical protein -
  ATE38_RS06060 - 1197174..1197698 (+) 525 WP_001015117.1 shikimate kinase -
  ATE38_RS06065 gcvT 1197857..1198948 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 39652.55 Da        Isoelectric Point: 10.0338

>NTDB_id=56987 ATE38_RS06025 WP_053015094.1 1193089..1194117(+) (comGB) [Staphylococcus aureus strain OC8]
MKLQCINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVIKSV

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=56987 ATE38_RS06025 WP_053015094.1 1193089..1194117(+) (comGB) [Staphylococcus aureus strain OC8]
GTGAAACTACAATGCATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGACTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTGATAAAGTCCGTATAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-339)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.704

98.83

0.985
  comGB Staphylococcus aureus N315

99.704

98.83

0.985

Multiple sequence alignment