Detailed information NTG0569740

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: KJY40_RS21860
• Genome accession: NZ_CP075567
• Coordinates: 4843385..4845628 (-)
• Length: 747 a.a.
• NCBI ID: WP_230732812.1
• Uniprot ID: -
• Organism: Pseudomonas fitomaticsae strain FIT81
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4838385..4850628

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KJY40_RS21825 (KJY40_21775)	murB	4838785..4839804 (-)	1020	WP_230732804.1	UDP-N-acetylmuramate dehydrogenase	-
KJY40_RS21830 (KJY40_21780)	-	4839801..4840265 (-)	465	WP_230732807.1	low molecular weight protein-tyrosine-phosphatase	-
KJY40_RS21835 (KJY40_21785)	kdsB	4840265..4841029 (-)	765	WP_064383500.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
KJY40_RS21840 (KJY40_21790)	-	4841026..4841211 (-)	186	WP_003179363.1	Trm112 family protein	-
KJY40_RS21845 (KJY40_21795)	lpxK	4841236..4842246 (-)	1011	WP_230732810.1	tetraacyldisaccharide 4'-kinase	-
KJY40_RS21850 (KJY40_21800)	-	4842246..4842674 (-)	429	WP_007950767.1	biopolymer transporter ExbD	-
KJY40_RS21855 (KJY40_21805)	exbB	4842671..4843306 (-)	636	WP_162803842.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
KJY40_RS21860 (KJY40_21810)	comA	4843385..4845628 (-)	2244	WP_230732812.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
KJY40_RS21865 (KJY40_21815)	-	4845765..4846283 (+)	519	WP_230732814.1	DUF2062 domain-containing protein	-
KJY40_RS21870 (KJY40_21820)	-	4846338..4847117 (-)	780	WP_007950763.1	ABC transporter permease	-
KJY40_RS21875 (KJY40_21825)	-	4847114..4848046 (-)	933	WP_064598582.1	ABC transporter ATP-binding protein	-
KJY40_RS21880 (KJY40_21830)	-	4848180..4848803 (-)	624	WP_230732816.1	glutathione S-transferase family protein	-
KJY40_RS21885 (KJY40_21835)	-	4848847..4849506 (-)	660	WP_230732817.1	transglutaminase family protein	-

Sequence

Protein

• Length: 747 a.a.
• Molecular weight: 82164.37 Da
• Isoelectric Point: 10.6531

>NTDB_id=569740 KJY40_RS21860 WP_230732812.1 4843385..4845628(-) (comA) [Pseudomonas fitomaticsae strain FIT81]
MRTGMMALAVGLLAPVFLPALPPVGLLLVLPWVALMLLPFRSYPLAFFLFGFVWAGFSAQMALNDRLPSRLDGETRWVEG
RVVGLPQSAEGVVRFELADARSRHDKLPSLMRLAWYAGPEVKSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TVKDGQRLAPAQWAWRDSIRQRLLAVDAQGRNGALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGLLAALMYAL
VAGLARVGIWPVRWPWLPWACGLAFTAALGYGLLAGFDVPVRRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLMDPL
ASLRPGLWLSFIAVAVLIFTFGGRLGPWRWWQTWSRAQWLIAIGLCPVLVALSLPISLSGPLANLLAVPWVSFAVLPPAL
LGTLLLPIPYVGEGLLWLAGGLIDGLFRALALIAGRWPAWVPTTMQWWVWALGGLGALLLLLPRGVPLRPLGWPLLLVLA
FPPRERLAEGVADVWQLDVGQGLAILIRTRHHTLLYDSGPRFGDFDLGERVVLPALRKLGVEHLDLMLLSHADVDHAGGA
LAVAKGLPVSRVISGDPPGLPETLNAKACESGRQWQWDGVAFHLWQWADGHDSNQRSCVLQIEANGERLLLTGDIDSAAE
RDLLNSALAVQTRWLQAPHHGSRSSSSMALLKALRPQAVLISRGQGNSFGHPHPTVIARYRKQGIHIHDSAEQGAIHLQL
GRFQPARSMRQQRRFWRDPPLPGAEYR

Nucleotide

• Length: 2244 bp

>NTDB_id=569740 KJY40_RS21860 WP_230732812.1 4843385..4845628(-) (comA) [Pseudomonas fitomaticsae strain FIT81]
ATGCGCACAGGGATGATGGCGCTGGCGGTCGGTCTGCTGGCTCCGGTTTTTTTACCGGCCTTGCCGCCGGTCGGGTTATT
GCTGGTGTTGCCGTGGGTGGCGCTGATGCTGTTGCCGTTTCGCAGCTATCCACTGGCGTTTTTTTTGTTTGGATTCGTAT
GGGCGGGTTTCAGCGCGCAGATGGCGTTGAATGACCGACTGCCTTCACGGCTGGATGGTGAAACGCGCTGGGTGGAGGGG
CGGGTCGTCGGTTTGCCGCAGAGTGCCGAGGGCGTCGTGCGGTTCGAACTGGCCGATGCCCGCTCGCGTCACGACAAACT
GCCGTCGCTGATGCGTCTGGCCTGGTACGCCGGGCCAGAGGTCAAAAGTGGTGAACGCTGGCGACTGGCGGTCAAGCTCA
AGCGCCCCGGTGGGCTGCTCAATCCGGATGCGTTCGATTACGAAGCCTGGCTGTTGGCGCAGCGCATCGGCGCTACCGGG
ACGGTGAAGGATGGTCAGCGCCTGGCGCCGGCGCAGTGGGCCTGGCGCGACAGTATTCGCCAGCGCCTGCTAGCAGTGGA
TGCCCAGGGACGTAACGGCGCTCTGGCCGCGTTGGTGCTCGGCGATGGCTCCGGGCTCAGTCGCGAAGATTGGCAGATCT
TGCAGGACACCGGCACCGTACACCTGCTGGTGATTTCCGGTCAGCACATCGGGCTGTTGGCGGCGTTGATGTATGCGCTG
GTCGCCGGGCTGGCGCGGGTCGGGATCTGGCCGGTGCGTTGGCCCTGGCTGCCCTGGGCGTGCGGTCTGGCATTCACGGC
GGCGCTGGGTTACGGCTTGCTGGCCGGATTCGATGTACCGGTGCGGCGGGCCTGCGTGATGGTTGCGCTGGTGCTGCTGT
GGCGTTTGCGTTTTCGCCACCTCGGTGCGTGGTGGCCGCTGCTGCTGGCCTTCAACGGCGTGTTGTTGATGGATCCGCTG
GCCAGTCTGCGTCCGGGGTTGTGGCTGTCATTTATCGCGGTCGCCGTGCTGATCTTCACCTTCGGCGGCCGTCTGGGGCC
GTGGCGCTGGTGGCAGACCTGGTCGCGCGCGCAGTGGCTGATCGCGATCGGCTTGTGCCCGGTGCTGGTGGCGTTGAGTC
TGCCGATCAGTCTCAGTGGGCCACTGGCCAATCTGCTGGCGGTGCCGTGGGTCAGTTTTGCGGTGCTGCCGCCGGCGTTG
CTTGGCACTTTGTTACTGCCAATCCCTTATGTCGGGGAAGGGCTGCTGTGGCTGGCCGGCGGACTGATCGATGGATTGTT
CCGGGCACTGGCCCTGATTGCCGGTCGTTGGCCGGCGTGGGTGCCGACGACGATGCAGTGGTGGGTCTGGGCGCTGGGAG
GTCTTGGTGCCCTGTTGTTATTGCTGCCCCGAGGCGTTCCCTTGCGTCCCTTGGGCTGGCCATTGCTGCTGGTGCTGGCA
TTTCCGCCTCGAGAGCGTCTGGCCGAAGGTGTGGCCGATGTCTGGCAACTGGATGTCGGGCAAGGTCTGGCAATTCTGAT
CCGCACCCGGCATCACACCTTGCTGTACGACAGCGGCCCGCGTTTCGGCGATTTCGACCTCGGCGAGCGGGTGGTGCTGC
CGGCATTGCGCAAACTGGGGGTGGAACACCTCGACCTGATGCTGCTCAGCCATGCCGATGTCGATCACGCGGGTGGCGCA
CTCGCGGTGGCGAAAGGATTGCCGGTCAGCCGGGTCATCAGCGGCGATCCGCCGGGGTTGCCCGAAACGCTGAACGCCAA
GGCTTGTGAAAGCGGCCGGCAATGGCAGTGGGACGGCGTTGCCTTTCATCTATGGCAGTGGGCCGACGGCCATGACAGCA
ACCAGCGTTCCTGCGTGTTGCAGATCGAAGCCAACGGCGAACGGTTACTGCTGACCGGCGATATCGACAGCGCTGCCGAA
CGGGACCTGCTCAACAGCGCACTGGCAGTTCAAACCCGATGGCTTCAAGCCCCGCATCACGGTAGCCGCAGTTCCTCATC
GATGGCCTTGCTCAAGGCTTTGCGACCACAGGCGGTGCTGATTTCCCGAGGGCAGGGCAACTCGTTCGGTCACCCGCACC
CGACGGTCATCGCCCGCTACCGCAAACAGGGCATACACATCCATGACAGCGCCGAGCAGGGCGCCATTCATCTGCAACTG
GGGCGGTTTCAGCCGGCCCGGTCGATGCGTCAACAACGCCGCTTCTGGCGCGACCCGCCGTTGCCGGGGGCGGAGTACCG
TTGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (24-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.143	96.252	0.608
comA	Ralstonia pseudosolanacearum GMI1000	34.487	100	0.36