Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KJY40_RS21855 Genome accession   NZ_CP075567
Coordinates   4842671..4843306 (-) Length   211 a.a.
NCBI ID   WP_162803842.1    Uniprot ID   -
Organism   Pseudomonas fitomaticsae strain FIT81     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4837671..4848306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJY40_RS21820 (KJY40_21770) - 4838068..4838538 (-) 471 WP_039770687.1 (2Fe-2S)-binding protein -
  KJY40_RS21825 (KJY40_21775) murB 4838785..4839804 (-) 1020 WP_230732804.1 UDP-N-acetylmuramate dehydrogenase -
  KJY40_RS21830 (KJY40_21780) - 4839801..4840265 (-) 465 WP_230732807.1 low molecular weight protein-tyrosine-phosphatase -
  KJY40_RS21835 (KJY40_21785) kdsB 4840265..4841029 (-) 765 WP_064383500.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KJY40_RS21840 (KJY40_21790) - 4841026..4841211 (-) 186 WP_003179363.1 Trm112 family protein -
  KJY40_RS21845 (KJY40_21795) lpxK 4841236..4842246 (-) 1011 WP_230732810.1 tetraacyldisaccharide 4'-kinase -
  KJY40_RS21850 (KJY40_21800) - 4842246..4842674 (-) 429 WP_007950767.1 biopolymer transporter ExbD -
  KJY40_RS21855 (KJY40_21805) exbB 4842671..4843306 (-) 636 WP_162803842.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KJY40_RS21860 (KJY40_21810) comA 4843385..4845628 (-) 2244 WP_230732812.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KJY40_RS21865 (KJY40_21815) - 4845765..4846283 (+) 519 WP_230732814.1 DUF2062 domain-containing protein -
  KJY40_RS21870 (KJY40_21820) - 4846338..4847117 (-) 780 WP_007950763.1 ABC transporter permease -
  KJY40_RS21875 (KJY40_21825) - 4847114..4848046 (-) 933 WP_064598582.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22842.96 Da        Isoelectric Point: 7.3615

>NTDB_id=569739 KJY40_RS21855 WP_162803842.1 4842671..4843306(-) (exbB) [Pseudomonas fitomaticsae strain FIT81]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=569739 KJY40_RS21855 WP_162803842.1 4842671..4843306(-) (exbB) [Pseudomonas fitomaticsae strain FIT81]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCTGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCACCGCTGGGGGAAATCCTCGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATTGAAGAAGCGGCCGCCCGGGTCATCCACGAGCTGGAGCGTTACGT
CAACGCGCTGGGCACCATCGCTGCCATGTCGCCGTTGCTCGGTCTGCTGGGTACGGTGCTGGGCATGATCGACATTTTCA
GTGCGTTCACCGGTTCCGGCATGACCACCAATGCTTCGGTCCTGGCCGGCGGTATTTCCAAGGCGCTGATCACCACCGCT
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGTATCGATGAACTGGTGGTAGGCAT
GGAACAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848