Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   KJF94_RS18960 Genome accession   NZ_CP075566
Coordinates   4070688..4072910 (-) Length   740 a.a.
NCBI ID   WP_214377860.1    Uniprot ID   -
Organism   Pseudomonas hormoni strain G20-18     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4065688..4077910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJF94_RS18925 (KJF94_18925) murB 4066063..4067082 (-) 1020 WP_214377849.1 UDP-N-acetylmuramate dehydrogenase -
  KJF94_RS18930 (KJF94_18930) - 4067079..4067543 (-) 465 WP_214377851.1 low molecular weight protein-tyrosine-phosphatase -
  KJF94_RS18935 (KJF94_18935) kdsB 4067543..4068307 (-) 765 WP_214377853.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KJF94_RS18940 (KJF94_18940) - 4068304..4068489 (-) 186 WP_007945752.1 Trm112 family protein -
  KJF94_RS18945 (KJF94_18945) lpxK 4068513..4069523 (-) 1011 WP_214377855.1 tetraacyldisaccharide 4'-kinase -
  KJF94_RS18950 (KJF94_18950) - 4069523..4069954 (-) 432 WP_214377856.1 biopolymer transporter ExbD -
  KJF94_RS18955 (KJF94_18955) exbB 4069951..4070589 (-) 639 WP_214377858.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KJF94_RS18960 (KJF94_18960) comA 4070688..4072910 (-) 2223 WP_214377860.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KJF94_RS18965 (KJF94_18965) - 4073046..4073564 (+) 519 WP_214377862.1 DUF2062 domain-containing protein -
  KJF94_RS18970 (KJF94_18970) - 4074186..4075453 (-) 1268 Protein_3768 IS110 family transposase -
  KJF94_RS18975 (KJF94_18975) - 4075980..4076759 (-) 780 WP_214377864.1 ABC transporter permease -
  KJF94_RS18980 (KJF94_18980) - 4076756..4077688 (-) 933 WP_214377866.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 81148.31 Da        Isoelectric Point: 10.1797

>NTDB_id=569706 KJF94_RS18960 WP_214377860.1 4070688..4072910(-) (comA) [Pseudomonas hormoni strain G20-18]
MRTGMMALALGLLALRFLPVLPPVWLWLVLPVMGLMALPFRTYPLAFFLFGFSWAGANAQWALDDRLSANLDGETRWVEG
RVTGLPQNNDGVVRFELTDARSRQAKVPSLMRLAWYDGPPVNSGERWRLAVKLKRPAGLLNPHAFDYDAWLLAQRIGATG
TVKDGQRLAEARWAWRDGIRQRLQAVDAQGRTGALTALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHVGLLAGVVYLL
IAGLARYGMWPNRLPWLPWACGLAFAAALGYGLLAGFEVPVRRACVMIGLVLLWRLRFRHLGAWWPLLLALNAVLLLDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLGPLLLVLGLPISLSGPVANLLAVPWISLLVLPPAL
LGTLLLPLPYVGEGLLWLAGGLIDWLFKGLGLMAGQLPAWVPVAIPLCTWALGTLGAFLLLMPRGVPLRPLGWPLLLLLV
FPPRPLLPEGIAEVWQLDVGQGLAILVRTRHHTLLYDAGPRFGDFDLGERVVLPTLRKLGVGGLDLMLLSHADADHAGGA
RAVAHGLPVTRVLSGDPEALPVELHAEACESGRQWTWDDVRFQLWQWPSASDSNQKSCVLQIEANGERLLLTGDIDSAAE
RALLDSPLAVPTDWLQAPHHGSRSSSSMALLAALQPKAVLISRGNGNSFGHPHPTVMARYIKRGMAIHDSVEQGAIRLQL
GRFKPASTMRQERRFWRSMP

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=569706 KJF94_RS18960 WP_214377860.1 4070688..4072910(-) (comA) [Pseudomonas hormoni strain G20-18]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGCCTGCTGGCCCTGCGTTTTTTGCCGGTATTACCGCCGGTCTGGTTATG
GCTGGTGTTGCCCGTAATGGGATTGATGGCACTGCCGTTCCGCACGTATCCATTGGCGTTCTTTCTGTTCGGCTTCAGTT
GGGCGGGCGCGAATGCACAGTGGGCGCTGGACGATCGTTTGTCGGCGAATCTCGATGGTGAAACGCGCTGGGTCGAAGGC
CGGGTGACGGGATTGCCGCAGAATAATGACGGGGTTGTGCGTTTCGAACTGACGGACGCCCGGTCGCGACAGGCAAAGGT
GCCGTCACTGATGCGTCTGGCCTGGTATGACGGACCACCGGTCAACAGTGGCGAACGCTGGCGGCTGGCAGTGAAACTGA
AGCGTCCTGCCGGGCTGCTCAATCCCCATGCCTTCGATTACGACGCCTGGCTGCTGGCGCAACGCATCGGTGCAACCGGA
ACCGTCAAGGATGGCCAGCGTCTTGCTGAAGCCCGGTGGGCCTGGCGCGACGGCATCCGGCAACGCTTGCAAGCCGTGGA
CGCTCAGGGGCGAACCGGTGCACTGACGGCGCTGGTGCTGGGGGATGGCGCCGGACTCAGTCGCGAGGACTGGCAGGTGT
TGCAAGACACCGGCACCGTGCACCTGTTGGTGATTTCCGGGCAGCACGTCGGTCTGCTGGCAGGCGTGGTGTATCTGCTG
ATCGCCGGGCTGGCGCGCTACGGTATGTGGCCGAATCGCTTGCCCTGGCTGCCATGGGCGTGCGGATTGGCATTCGCCGC
AGCCCTTGGTTACGGACTGCTGGCAGGATTCGAAGTGCCGGTGCGGCGAGCCTGCGTGATGATCGGGCTGGTGCTGTTGT
GGCGCCTGCGATTTCGCCACCTCGGTGCCTGGTGGCCGTTGTTGCTGGCGCTCAACGCGGTGCTGTTGCTGGATCCGCTG
GCGAGTCTGCAACCGGGTTTCTGGTTGTCCTTCGCGGCGGTGGCGGTGTTGATCTTCACCTTCGGCGGGCGCCTCGGCCC
TTGGCGATGGTGGCAAACCTGGACCCGCGCTCAATGGCTGATAGCAATCGGCCTGGGCCCGTTGCTGCTGGTGCTCGGAT
TGCCGATCAGTCTCAGCGGGCCGGTCGCCAATCTGCTGGCGGTGCCCTGGATCAGTTTGCTGGTATTGCCGCCGGCCTTG
CTGGGAACCCTGTTGTTGCCGCTGCCATATGTGGGCGAGGGGTTGCTTTGGTTGGCGGGTGGGCTGATCGACTGGCTGTT
CAAGGGCCTTGGGTTAATGGCCGGTCAATTGCCCGCGTGGGTGCCTGTGGCGATTCCATTGTGTACATGGGCGCTGGGCA
CCCTCGGCGCGTTTCTGCTGTTGATGCCGCGCGGCGTACCGCTGCGCCCATTGGGTTGGCCGCTGTTGCTGTTGCTGGTT
TTTCCTCCTCGGCCACTGTTGCCAGAGGGGATCGCCGAAGTCTGGCAACTGGATGTTGGCCAGGGGTTGGCGATCCTGGT
GCGAACCCGCCATCACACGCTGTTGTATGACGCCGGCCCGCGCTTCGGCGACTTCGACCTCGGCGAACGAGTGGTGCTGC
CCACCTTGCGCAAACTGGGCGTGGGCGGACTCGACCTGATGTTGCTCAGCCACGCCGACGCCGATCACGCCGGCGGTGCG
CGAGCGGTTGCCCATGGTTTGCCGGTGACGCGAGTGCTCAGCGGCGATCCCGAGGCGCTACCCGTCGAACTGCACGCCGA
GGCCTGCGAGAGTGGCCGGCAATGGACTTGGGACGATGTGAGGTTTCAGCTCTGGCAATGGCCTTCCGCCTCGGACAGCA
ATCAAAAATCCTGCGTCCTGCAGATCGAAGCCAATGGCGAGCGCTTGCTGCTGACGGGTGATATTGACAGCGCTGCCGAA
CGAGCCCTGCTCGACAGTCCGCTGGCCGTGCCCACTGACTGGTTGCAGGCGCCGCACCACGGCAGCCGCAGTTCGTCGTC
AATGGCGCTGCTCGCCGCGTTGCAGCCCAAAGCGGTGCTGATCTCGCGCGGCAACGGCAATTCCTTCGGCCACCCGCATC
CCACCGTCATGGCTCGCTATATAAAGCGCGGCATGGCGATCCATGACAGCGTCGAGCAGGGCGCCATTCGTCTGCAGCTC
GGACGCTTCAAGCCAGCGTCGACGATGCGTCAGGAACGGCGTTTCTGGCGTTCCATGCCATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-167)

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-681)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

64.106

96.757

0.62
  comA Ralstonia pseudosolanacearum GMI1000

33.728

100

0.385