Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KJF94_RS18955 Genome accession   NZ_CP075566
Coordinates   4069951..4070589 (-) Length   212 a.a.
NCBI ID   WP_214377858.1    Uniprot ID   -
Organism   Pseudomonas hormoni strain G20-18     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4064951..4075589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJF94_RS18915 (KJF94_18915) - 4064980..4065570 (-) 591 WP_214377847.1 nucleotidyltransferase family protein -
  KJF94_RS18920 (KJF94_18920) - 4065567..4065975 (-) 409 Protein_3758 XdhC family protein -
  KJF94_RS18925 (KJF94_18925) murB 4066063..4067082 (-) 1020 WP_214377849.1 UDP-N-acetylmuramate dehydrogenase -
  KJF94_RS18930 (KJF94_18930) - 4067079..4067543 (-) 465 WP_214377851.1 low molecular weight protein-tyrosine-phosphatase -
  KJF94_RS18935 (KJF94_18935) kdsB 4067543..4068307 (-) 765 WP_214377853.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KJF94_RS18940 (KJF94_18940) - 4068304..4068489 (-) 186 WP_007945752.1 Trm112 family protein -
  KJF94_RS18945 (KJF94_18945) lpxK 4068513..4069523 (-) 1011 WP_214377855.1 tetraacyldisaccharide 4'-kinase -
  KJF94_RS18950 (KJF94_18950) - 4069523..4069954 (-) 432 WP_214377856.1 biopolymer transporter ExbD -
  KJF94_RS18955 (KJF94_18955) exbB 4069951..4070589 (-) 639 WP_214377858.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KJF94_RS18960 (KJF94_18960) comA 4070688..4072910 (-) 2223 WP_214377860.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KJF94_RS18965 (KJF94_18965) - 4073046..4073564 (+) 519 WP_214377862.1 DUF2062 domain-containing protein -
  KJF94_RS18970 (KJF94_18970) - 4074186..4075453 (-) 1268 Protein_3768 IS110 family transposase -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23131.29 Da        Isoelectric Point: 7.3619

>NTDB_id=569705 KJF94_RS18955 WP_214377858.1 4069951..4070589(-) (exbB) [Pseudomonas hormoni strain G20-18]
MWELVKSGGWMMLPIILSSIAAMAITAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRANSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLSEGKRA

Nucleotide


Download         Length: 639 bp        

>NTDB_id=569705 KJF94_RS18955 WP_214377858.1 4069951..4070589(-) (exbB) [Pseudomonas hormoni strain G20-18]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCACCGC
CGAGCGTCTCTGGACCCTGCGTGCCAGCCGTGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTGTGGATCAAGGACA
AGCAACTCAATAAAGACAAACTCAAGGAACTGCGCGCCAACTCGCCGTTGGGCGAGATCCTGGCGGCGGGCCTGGCCAAC
TCCAGGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCTGCGCGAGTGATTCACGAGCTCGAACGCTACAT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGTTGCTGGGGCTGTTGGGCACGGTGTTGGGCATGATCGATATTTTCA
GCGCGTTCATGGGCTCGGGCATGACCACCAACGCCGCGGTGCTGGCCGGTGGTATTTCCAAGGCGCTGATTACCACGGCT
GCGGGCCTGATGGTCGGTATCCCGTCAGTGTTCTTCCACCGTTTCCTGCAACGCCGGATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAGGTGGTGCAGGGTGACCGTGACGTGGACCTGTCCGAGGGCAAAAGAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.238

99.057

0.844