Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MMZ72_RS24160 Genome accession   NZ_CP093021
Coordinates   5216382..5216807 (+) Length   141 a.a.
NCBI ID   WP_121130207.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H09     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5211382..5221807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ72_RS24145 (MMZ72_24145) pilX 5211952..5212539 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  MMZ72_RS24150 (MMZ72_24150) pilY1 5212551..5216036 (+) 3486 WP_241469223.1 type 4a pilus biogenesis protein PilY1 -
  MMZ72_RS24155 (MMZ72_24155) pilY2 5216038..5216385 (+) 348 WP_024914645.1 type 4a fimbrial biogenesis protein PilY2 -
  MMZ72_RS24160 (MMZ72_24160) comF 5216382..5216807 (+) 426 WP_121130207.1 type 4a pilus minor pilin PilE Machinery gene
  MMZ72_RS24165 (MMZ72_24165) ispH 5216852..5217796 (-) 945 WP_003134939.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  MMZ72_RS24170 (MMZ72_24170) fkpB 5217882..5218322 (-) 441 WP_024914643.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  MMZ72_RS24175 (MMZ72_24175) lspA 5218315..5218824 (-) 510 WP_024914642.1 signal peptidase II -
  MMZ72_RS24180 (MMZ72_24180) ileS 5218817..5221648 (-) 2832 WP_024914641.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15308.34 Da        Isoelectric Point: 9.8393

>NTDB_id=569705 MMZ72_RS24160 WP_121130207.1 5216382..5216807(+) (comF) [Pseudomonas aeruginosa strain H09]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDVAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYSLTIETPTSTAYTLTATPINSQTRDKSCGKLTLNQLGERGAAGKTGNNTTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=569705 MMZ72_RS24160 WP_121130207.1 5216382..5216807(+) (comF) [Pseudomonas aeruginosa strain H09]
ATGAGGACAAGACAGAAGGGCTTCACATTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATCCCGAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGTGGCCGCGCGCC
AGGAGCGCTATTACTCGCAGAATCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTCTACAGCCTCACCATAGAGACCCCGACCAGCACCGCCTACACTCTGACCGCGACCCCGATCAATTCGCA
GACGCGCGACAAGTCCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACTGGCAACAACA
CCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

39.31

100

0.404