Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   KIW23_RS08680 Genome accession   NZ_CP075561
Coordinates   1813399..1814688 (-) Length   429 a.a.
NCBI ID   WP_251314634.1    Uniprot ID   -
Organism   Floricoccus penangensis strain ML061-4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1808399..1819688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIW23_RS08655 (KIW23_08670) - 1809073..1810092 (+) 1020 WP_251314630.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  KIW23_RS08660 (KIW23_08675) galU 1810125..1811063 (+) 939 WP_251314631.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  KIW23_RS08665 (KIW23_08680) rsmG 1811170..1811883 (+) 714 WP_251314632.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  KIW23_RS08670 (KIW23_08685) - 1811977..1812510 (-) 534 WP_070788349.1 YtxH domain-containing protein -
  KIW23_RS08675 (KIW23_08690) - 1812737..1813243 (-) 507 WP_251314633.1 ComF family protein -
  KIW23_RS08680 (KIW23_08695) comFA/cflA 1813399..1814688 (-) 1290 WP_251314634.1 DEAD/DEAH box helicase Machinery gene
  KIW23_RS08690 (KIW23_08705) - 1815205..1815831 (-) 627 WP_251314635.1 YigZ family protein -
  KIW23_RS08695 (KIW23_08710) - 1815966..1816406 (+) 441 WP_251314636.1 hypothetical protein -
  KIW23_RS08700 (KIW23_08715) - 1816538..1816843 (-) 306 WP_251314637.1 DUF1827 family protein -
  KIW23_RS08705 (KIW23_08720) - 1816910..1817395 (-) 486 WP_251314638.1 peroxiredoxin -
  KIW23_RS08710 (KIW23_08725) - 1817505..1818326 (-) 822 WP_251315676.1 amino acid ABC transporter substrate-binding protein -
  KIW23_RS08715 (KIW23_08730) - 1818322..1818957 (-) 636 WP_070788356.1 amino acid ABC transporter ATP-binding protein -
  KIW23_RS08720 (KIW23_08735) - 1818978..1819619 (-) 642 WP_251314639.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 429 a.a.        Molecular weight: 49002.50 Da        Isoelectric Point: 8.4431

>NTDB_id=569572 KIW23_RS08680 WP_251314634.1 1813399..1814688(-) (comFA/cflA) [Floricoccus penangensis strain ML061-4]
MEELLYGRILSEKELQSIPENVQRLESMSENGQYIICHRCNSKNLKEEVKLQIDAYYCPECINLGRVRSDEYLYHLPQKS
FPKREESVLKWSGKLTELQGNISKSLIEANKDKDSIWVHAVTGAGKTEMIYQVVAETINNGGVVGIASPRVDVCIELHKR
MVNDFDIDIALLYAEGDSYYRTQLMILTTHQLLRFKGAFDLLIIDEVDAFPFADNPMLYYAAENSRKKESCLIYLTATAT
KNLNNKVSKGSLKKVNLPRRFHGSPLVVPKNIWCNIPWEVEKIPQKLFSYIQEQRKTGFPLLIFAPVISFGHKFEKTLQK
FFPNEKIACVSSISENRKDLVNDFREEKIDILITTTILERGVTFPRVDVFVLHANHKLFTSSSLVQISGRTGRSPERTSG
LVYFFHNGKSKGMVDAISEIKDMNRLGGF

Nucleotide


Download         Length: 1290 bp        

>NTDB_id=569572 KIW23_RS08680 WP_251314634.1 1813399..1814688(-) (comFA/cflA) [Floricoccus penangensis strain ML061-4]
ATGGAAGAACTTTTATACGGACGTATCCTTAGTGAAAAAGAATTGCAGTCAATCCCTGAAAACGTACAAAGATTAGAATC
TATGTCTGAAAATGGTCAATATATTATATGTCACCGCTGTAACAGTAAGAATCTGAAAGAAGAAGTAAAGTTACAGATAG
ATGCTTATTATTGCCCAGAATGTATAAACTTAGGCAGGGTAAGATCAGATGAGTATTTATATCATTTACCGCAAAAATCT
TTTCCTAAAAGGGAAGAAAGTGTTTTGAAGTGGTCAGGAAAGTTAACTGAATTACAAGGGAATATTTCAAAATCTTTGAT
AGAAGCAAATAAAGATAAAGATTCAATTTGGGTGCATGCAGTAACAGGAGCAGGAAAAACCGAGATGATTTATCAGGTAG
TTGCTGAAACCATCAATAATGGAGGAGTAGTAGGTATTGCATCCCCACGAGTTGATGTATGCATTGAACTTCATAAACGT
ATGGTTAATGATTTTGATATAGATATAGCCTTATTATATGCAGAAGGAGATTCATATTATCGGACACAATTAATGATTTT
GACTACCCATCAGCTTTTACGTTTTAAGGGAGCATTTGATTTATTAATAATAGATGAAGTTGATGCCTTTCCATTTGCGG
ATAATCCAATGCTTTATTATGCTGCTGAAAATTCGCGAAAAAAAGAATCATGCCTTATATATTTAACTGCAACTGCTACA
AAAAATCTTAATAATAAAGTTTCTAAAGGAAGTTTGAAAAAAGTAAATTTACCAAGAAGGTTTCATGGAAGTCCCTTAGT
TGTTCCCAAAAATATTTGGTGTAATATTCCATGGGAAGTAGAAAAGATACCTCAAAAACTATTTTCTTATATTCAAGAAC
AAAGGAAAACAGGCTTTCCTTTATTGATTTTTGCTCCTGTAATTTCATTTGGTCATAAATTTGAAAAGACTTTACAAAAA
TTCTTTCCAAATGAAAAAATCGCTTGTGTTTCAAGCATTAGTGAAAATCGTAAAGACCTTGTTAATGATTTTAGGGAAGA
AAAAATTGATATTTTAATAACTACAACTATTTTAGAGAGGGGTGTTACATTTCCAAGAGTTGATGTATTTGTCCTTCATG
CAAACCATAAGCTCTTTACTTCAAGCTCCTTAGTCCAGATATCCGGCCGAACTGGCAGAAGTCCTGAGAGAACAAGTGGT
TTAGTGTATTTTTTTCATAATGGTAAAAGTAAAGGTATGGTTGATGCTATATCTGAAATTAAAGATATGAATAGATTGGG
AGGATTTTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(289-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus mitis NCTC 12261

53.63

99.534

0.534
  comFA/cflA Streptococcus pneumoniae Rx1

53.63

99.534

0.534
  comFA/cflA Streptococcus pneumoniae D39

53.63

99.534

0.534
  comFA/cflA Streptococcus pneumoniae R6

53.63

99.534

0.534
  comFA/cflA Streptococcus pneumoniae TIGR4

53.396

99.534

0.531
  comFA/cflA Streptococcus mitis SK321

53.162

99.534

0.529
  comFA Lactococcus lactis subsp. cremoris KW2

54.613

93.473

0.51
  comFA Bacillus subtilis subsp. subtilis str. 168

40.146

95.804

0.385