Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   KHS93_RS17005 Genome accession   NZ_CP075547
Coordinates   3447163..3447852 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain SN16-1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3442163..3452852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHS93_RS16970 (KHS93_16970) - 3442361..3442843 (-) 483 WP_003151394.1 flagellar protein FlgN -
  KHS93_RS16975 (KHS93_16975) flgM 3442858..3443124 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  KHS93_RS16980 (KHS93_16980) - 3443194..3443613 (-) 420 WP_069473598.1 TIGR03826 family flagellar region protein -
  KHS93_RS16985 (KHS93_16985) comFC 3443687..3444376 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  KHS93_RS16990 (KHS93_16990) - 3444382..3444666 (-) 285 WP_057080260.1 competence protein ComFB -
  KHS93_RS16995 (KHS93_16995) comFA 3444724..3446109 (-) 1386 WP_069473599.1 DEAD/DEAH box helicase Machinery gene
  KHS93_RS17000 (KHS93_17000) - 3446217..3447065 (-) 849 WP_043867471.1 DegV family protein -
  KHS93_RS17005 (KHS93_17005) degU 3447163..3447852 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KHS93_RS17010 (KHS93_17010) degS 3447929..3449092 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  KHS93_RS17015 (KHS93_17015) - 3449315..3449962 (+) 648 WP_043867472.1 YigZ family protein -
  KHS93_RS17020 (KHS93_17020) - 3449967..3451181 (+) 1215 WP_043867473.1 LCP family protein -
  KHS93_RS17025 (KHS93_17025) - 3451271..3452347 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=569485 KHS93_RS17005 WP_003219701.1 3447163..3447852(-) (degU) [Bacillus amyloliquefaciens strain SN16-1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=569485 KHS93_RS17005 WP_003219701.1 3447163..3447852(-) (degU) [Bacillus amyloliquefaciens strain SN16-1]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1