Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   KHS93_RS16985 Genome accession   NZ_CP075547
Coordinates   3443687..3444376 (-) Length   229 a.a.
NCBI ID   WP_196616643.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SN16-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3438687..3449376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHS93_RS16950 (KHS93_16950) fliW 3438778..3439209 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  KHS93_RS16955 (KHS93_16955) - 3439239..3439808 (-) 570 WP_003151397.1 DUF6470 family protein -
  KHS93_RS16960 (KHS93_16960) flgL 3439899..3440816 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  KHS93_RS16965 (KHS93_16965) flgK 3440828..3442345 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  KHS93_RS16970 (KHS93_16970) - 3442361..3442843 (-) 483 WP_003151394.1 flagellar protein FlgN -
  KHS93_RS16975 (KHS93_16975) flgM 3442858..3443124 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  KHS93_RS16980 (KHS93_16980) - 3443194..3443613 (-) 420 WP_069473598.1 TIGR03826 family flagellar region protein -
  KHS93_RS16985 (KHS93_16985) comFC 3443687..3444376 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  KHS93_RS16990 (KHS93_16990) - 3444382..3444666 (-) 285 WP_057080260.1 competence protein ComFB -
  KHS93_RS16995 (KHS93_16995) comFA 3444724..3446109 (-) 1386 WP_069473599.1 DEAD/DEAH box helicase Machinery gene
  KHS93_RS17000 (KHS93_17000) - 3446217..3447065 (-) 849 WP_043867471.1 DegV family protein -
  KHS93_RS17005 (KHS93_17005) degU 3447163..3447852 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KHS93_RS17010 (KHS93_17010) degS 3447929..3449092 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25259.95 Da        Isoelectric Point: 8.4880

>NTDB_id=569483 KHS93_RS16985 WP_196616643.1 3443687..3444376(-) (comFC) [Bacillus amyloliquefaciens strain SN16-1]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=569483 KHS93_RS16985 WP_196616643.1 3443687..3444376(-) (comFC) [Bacillus amyloliquefaciens strain SN16-1]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTTTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603