Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdK   Type   Machinery gene
Locus tag   KHC33_RS00885 Genome accession   NZ_CP075546
Coordinates   171411..172403 (+) Length   330 a.a.
NCBI ID   WP_214419924.1    Uniprot ID   A0A8E7AWU1
Organism   Methanospirillum purgamenti strain J.3.6.1-F.2.7.3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 166411..177403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHC33_RS00860 (KHC33_00860) - 166926..167462 (+) 537 WP_214419919.1 aldolase -
  KHC33_RS00865 (KHC33_00865) - 167465..167842 (+) 378 WP_214419920.1 hypothetical protein -
  KHC33_RS00870 (KHC33_00870) - 167845..168468 (-) 624 WP_214419921.1 RAD55 family ATPase -
  KHC33_RS00875 (KHC33_00875) epdL 168645..170486 (+) 1842 WP_214419922.1 type II/IV secretion system ATPase subunit Machinery gene
  KHC33_RS00880 (KHC33_00880) epdJ 170473..171408 (+) 936 WP_214419923.1 type II secretion system F family protein Machinery gene
  KHC33_RS00885 (KHC33_00885) epdK 171411..172403 (+) 993 WP_214419924.1 type II secretion system F family protein Machinery gene
  KHC33_RS00890 (KHC33_00890) - 172393..174435 (-) 2043 WP_214419925.1 CHASE4 domain-containing protein -
  KHC33_RS00895 (KHC33_00895) - 174583..176040 (-) 1458 WP_214419926.1 response regulator -
  KHC33_RS00900 (KHC33_00900) - 176340..176924 (-) 585 WP_250545205.1 acylphosphatase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36357.64 Da        Isoelectric Point: 7.0760

>NTDB_id=569414 KHC33_RS00885 WP_214419924.1 171411..172403(+) (epdK) [Methanospirillum purgamenti strain J.3.6.1-F.2.7.3]
MGLFGDRKKEKISVDPKSEEIYSKIETYYHYSEGTLRFIKHPFRTLFEKPINILYVSVPAGLLFFIVGLMMALQNGGPGA
LLTNSFIDDVAVFTTVIIVGPLAVTDLLEGRRITSIEIALPNFFRDLAGMHESGMTLPGAIHLVSQAEYGALTRHIRQLD
QRISWNFAFIDAIRQLGKEIPIPLVERSVDLVARASDAGGDIVEVLRAAGKDSAEYVIMKTDRKNNMFIYVIIILASFAV
FLFVVMILVSSFLKTMADLGAETGASGQAGFNLGGFDLALYIRVFSHAGMFQGFFSGLVAGVMGEGRVTAGLKYSVLMLL
IAWITFRFMV

Nucleotide


Download         Length: 993 bp        

>NTDB_id=569414 KHC33_RS00885 WP_214419924.1 171411..172403(+) (epdK) [Methanospirillum purgamenti strain J.3.6.1-F.2.7.3]
ATGGGACTATTTGGGGACCGGAAAAAAGAAAAAATCTCGGTTGATCCGAAGAGTGAAGAGATTTATTCAAAAATTGAAAC
GTACTACCACTACTCCGAGGGCACACTCCGGTTTATCAAACACCCGTTCCGGACCCTGTTTGAAAAACCGATCAATATTC
TCTATGTGTCAGTCCCGGCAGGCCTTCTCTTTTTTATTGTCGGACTCATGATGGCCCTTCAGAATGGAGGTCCTGGAGCC
CTTCTGACAAATTCGTTCATAGATGATGTAGCAGTATTTACAACGGTTATCATCGTCGGACCCCTGGCGGTAACTGATCT
TCTTGAAGGAAGACGAATCACGAGTATCGAGATTGCGCTTCCCAACTTTTTTCGGGATCTGGCTGGTATGCACGAAAGTG
GTATGACCTTGCCTGGTGCTATTCACCTGGTATCTCAGGCTGAGTATGGTGCTCTCACCCGGCATATCCGCCAGCTTGAT
CAGCGCATATCATGGAACTTTGCATTCATTGATGCCATACGCCAGCTTGGAAAAGAGATCCCGATCCCTCTTGTGGAACG
GAGTGTGGATCTTGTAGCGCGTGCGAGTGATGCCGGTGGTGATATCGTTGAGGTTCTGCGTGCAGCCGGGAAGGACTCAG
CAGAATATGTGATCATGAAGACTGACCGGAAGAACAACATGTTCATCTATGTCATCATCATCCTTGCATCATTTGCAGTG
TTCCTCTTTGTAGTCATGATCCTGGTTTCATCGTTCCTGAAGACCATGGCCGATCTTGGAGCAGAAACGGGGGCATCTGG
TCAGGCAGGATTTAACCTGGGAGGGTTTGACCTGGCTCTCTATATACGCGTCTTCTCTCATGCCGGTATGTTCCAGGGAT
TTTTCTCAGGGCTTGTTGCCGGTGTCATGGGTGAAGGACGTGTTACAGCAGGCCTGAAATATTCAGTTCTGATGCTTCTT
ATTGCCTGGATTACATTCAGGTTTATGGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(123-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdK Methanoculleus thermophilus strain DSM 2373

55.806

93.939

0.524