Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   KIL00_RS13315 Genome accession   NZ_CP075344
Coordinates   2552295..2552630 (+) Length   111 a.a.
NCBI ID   WP_213783644.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain A1 - Midalam     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2547295..2557630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIL00_RS13295 (KIL00_13295) gcvT 2547888..2548976 (-) 1089 WP_017696204.1 glycine cleavage system aminomethyltransferase GcvT -
  KIL00_RS13300 (KIL00_13300) yqhH 2549417..2551090 (+) 1674 WP_038829735.1 SNF2-related protein -
  KIL00_RS13305 (KIL00_13305) yqhG 2551111..2551905 (+) 795 WP_014480249.1 YqhG family protein -
  KIL00_RS13310 (KIL00_13310) sinI 2552088..2552261 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  KIL00_RS13315 (KIL00_13315) sinR 2552295..2552630 (+) 336 WP_213783644.1 helix-turn-helix domain-containing protein Regulator
  KIL00_RS13320 (KIL00_13320) tasA 2552723..2553508 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  KIL00_RS13325 (KIL00_13325) sipW 2553572..2554144 (-) 573 WP_003230181.1 signal peptidase I -
  KIL00_RS13330 (KIL00_13330) tapA 2554128..2554889 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  KIL00_RS13335 (KIL00_13335) yqzG 2555161..2555487 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  KIL00_RS13340 (KIL00_13340) spoIIT 2555529..2555708 (-) 180 WP_014480252.1 YqzE family protein -
  KIL00_RS13345 (KIL00_13345) comGG 2555779..2556153 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  KIL00_RS13350 (KIL00_13350) comGF 2556154..2556537 (-) 384 WP_029317913.1 ComG operon protein ComGF Machinery gene
  KIL00_RS13355 (KIL00_13355) comGE 2556563..2556910 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  KIL00_RS13360 (KIL00_13360) comGD 2556894..2557325 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  KIL00_RS13365 (KIL00_13365) comGC 2557315..2557611 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12916.58 Da        Isoelectric Point: 8.3802

>NTDB_id=568921 KIL00_RS13315 WP_213783644.1 2552295..2552630(+) (sinR) [Bacillus subtilis subsp. subtilis strain A1 - Midalam]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSGWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=568921 KIL00_RS13315 WP_213783644.1 2552295..2552630(+) (sinR) [Bacillus subtilis subsp. subtilis strain A1 - Midalam]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGGATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991