Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KIL00_RS07945 Genome accession   NZ_CP075344
Coordinates   1517651..1517929 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis subsp. subtilis strain A1 - Midalam     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1512651..1522929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIL00_RS07925 (KIL00_07925) - 1513838..1514749 (+) 912 WP_017696822.1 ketopantoate reductase family protein -
  KIL00_RS07930 (KIL00_07930) ampS 1514783..1516015 (-) 1233 WP_003232341.1 aminopeptidase -
  KIL00_RS07935 (KIL00_07935) ykpC 1516125..1516259 (-) 135 WP_003238865.1 protein YkpC -
  KIL00_RS07940 (KIL00_07940) mreBH 1516360..1517367 (-) 1008 WP_026113694.1 cell shape-determining protein MreBH -
  KIL00_RS07945 (KIL00_07945) abrB 1517651..1517929 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  KIL00_RS07950 (KIL00_07950) kinC 1518119..1519405 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  KIL00_RS07955 (KIL00_07955) ykqA 1519421..1520254 (+) 834 WP_014479687.1 gamma-glutamylcyclotransferase -
  KIL00_RS07960 (KIL00_07960) ktrC 1520317..1520982 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  KIL00_RS07965 (KIL00_07965) ade 1521137..1522870 (+) 1734 WP_069837481.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=568912 KIL00_RS07945 WP_003244728.1 1517651..1517929(+) (abrB) [Bacillus subtilis subsp. subtilis strain A1 - Midalam]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=568912 KIL00_RS07945 WP_003244728.1 1517651..1517929(+) (abrB) [Bacillus subtilis subsp. subtilis strain A1 - Midalam]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576