Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   MLE07_RS07795 Genome accession   NZ_CP092892
Coordinates   1556135..1559101 (+) Length   988 a.a.
NCBI ID   WP_243015477.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain LN-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1551135..1564101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MLE07_RS07760 (MLE07_07760) - 1551344..1551748 (+) 405 WP_003507644.1 DUF2946 family protein -
  MLE07_RS07765 (MLE07_07765) - 1551796..1553160 (+) 1365 WP_243015475.1 PepSY domain-containing protein -
  MLE07_RS07770 (MLE07_07770) - 1553229..1553705 (-) 477 WP_243015476.1 nuclear transport factor 2 family protein -
  MLE07_RS07775 (MLE07_07775) - 1553718..1554329 (-) 612 WP_003507632.1 NAD(P)-dependent oxidoreductase -
  MLE07_RS07780 (MLE07_07780) - 1554484..1554867 (+) 384 WP_003507622.1 helix-turn-helix domain-containing protein -
  MLE07_RS07785 (MLE07_07785) - 1554986..1555408 (-) 423 WP_003507621.1 GNAT family N-acetyltransferase -
  MLE07_RS07790 (MLE07_07790) - 1555515..1555868 (-) 354 WP_020009373.1 DMT family protein -
  MLE07_RS07795 (MLE07_07795) uvrB 1556135..1559101 (+) 2967 WP_243015477.1 excinuclease ABC subunit UvrB Machinery gene
  MLE07_RS07800 (MLE07_07800) - 1559134..1560102 (+) 969 WP_243015478.1 alpha/beta hydrolase family protein -
  MLE07_RS07805 (MLE07_07805) - 1560131..1560556 (-) 426 WP_107675740.1 DUF1801 domain-containing protein -
  MLE07_RS07810 (MLE07_07810) - 1560720..1561175 (+) 456 WP_060723339.1 PRC-barrel domain-containing protein -
  MLE07_RS07815 (MLE07_07815) - 1561334..1561942 (+) 609 WP_243015479.1 DUF922 domain-containing Zn-dependent protease -
  MLE07_RS07820 (MLE07_07820) - 1561950..1562552 (-) 603 WP_003507613.1 J domain-containing protein -
  MLE07_RS07825 (MLE07_07825) - 1562948..1563301 (+) 354 WP_003507612.1 nuclear transport factor 2 family protein -

Sequence

Protein


Download         Length: 988 a.a.        Molecular weight: 108583.12 Da        Isoelectric Point: 5.8276

>NTDB_id=568833 MLE07_RS07795 WP_243015477.1 1556135..1559101(+) (uvrB) [Agrobacterium tumefaciens strain LN-1]
MARSPKNSTSSPSGFEEAPQSSFEGAPLSGSVSDWVKQLEAEAEASSVETQREIASKAGKHRKKIEIEARKDAEKAASKT
AKNTTASKTARGVSIGASSDPKTRAAAGLNPVAGMDVSLEDAANLAPGAVTATVDALSKLIESGNPLFKDGKLWTPHRPA
RPPKSEGGVTIRMASDYQPAGDQPTAINDLVEGINSGERSQVLLGVTGSGKTFTMAKVIEATQRPAVILAPNKTLAAQLY
SEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETY
TAMTFQMQVGDRLDQRQLLADLVAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDPLTGQK
TGDLQSVKIYANSHYVTPRPTLNGAIKSIKEELKVRLAELEKAGRLLEAQRLEQRTRYDIEMLEATGSCAGIENYSRYLT
GRNPGEPPPTLFEYIPDNALLFIDESHVSVSQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPLTVAVSA
TPGSWEMEQAGGVFAEQVIRPTGLIDPPVEVRSARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGVRVR
YMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYA
DNITGSMKRAMEETSRRREKQVAYNAEHGITPESVKAKISDILDSVYERDHVRADISGASGKGFADGGHLVGNNLQSHLN
ALEKSMRDAAADLDFEKAARLRDEIKRLKAAELATMDDPMAKEEARAIEGGGKNNRRSHLSISPPEGETSGRTEAGAAPN
ESGKSLFTKPSLDEMGPGSDAGKPLFRRNTLDEMTVGRTEKPVRSAVPDKPETESGKRFSPLMEGKPERTTDDPRPLVRG
KIGAGSYEDAGEQKRKSRTKGKTGRPGR

Nucleotide


Download         Length: 2967 bp        

>NTDB_id=568833 MLE07_RS07795 WP_243015477.1 1556135..1559101(+) (uvrB) [Agrobacterium tumefaciens strain LN-1]
ATGGCCAGATCACCGAAAAACTCCACCTCCTCGCCCTCGGGCTTCGAGGAAGCTCCGCAATCGTCGTTCGAAGGCGCCCC
GCTCAGCGGCAGCGTCTCCGATTGGGTGAAGCAGCTCGAGGCGGAAGCGGAGGCATCCTCCGTGGAAACCCAGCGCGAAA
TCGCCTCGAAGGCGGGCAAGCACCGCAAGAAGATCGAGATCGAAGCGCGCAAGGACGCGGAGAAGGCCGCCTCGAAGACG
GCCAAGAACACCACGGCCTCCAAGACCGCGCGCGGTGTTTCCATCGGCGCATCGAGCGATCCGAAAACCCGCGCCGCCGC
CGGCCTCAATCCGGTCGCCGGCATGGACGTATCGCTGGAGGATGCCGCCAACCTCGCGCCGGGCGCCGTCACCGCAACGG
TGGACGCGCTGTCGAAGCTGATCGAGAGCGGCAATCCGCTGTTCAAGGACGGCAAGCTGTGGACGCCGCACCGCCCGGCC
CGGCCGCCGAAGTCCGAAGGCGGCGTTACCATCCGCATGGCCTCGGACTATCAGCCCGCAGGCGACCAGCCGACGGCCAT
CAACGACCTCGTGGAAGGCATCAATTCCGGCGAGCGCAGCCAGGTCCTGCTCGGCGTCACCGGCTCCGGCAAGACCTTCA
CCATGGCCAAGGTGATCGAGGCGACACAGCGCCCGGCTGTCATCCTCGCCCCCAACAAGACGCTGGCCGCGCAGCTCTAT
TCGGAGTTCAAGAACTTCTTCCCCGACAATGCGGTGGAATATTTCGTCTCCTACTACGATTATTACCAGCCGGAAGCCTA
TGTGCCGCGCTCCGACACCTTCATCGAGAAAGAATCCTCGATCAACGAGCAGATCGACCGGATGCGCCACTCCGCCACTC
GCTCACTGCTGGAGCGCGACGACTGCATCATCGTCGCCTCGGTCTCCTGCATCTACGGTATCGGTTCGGTCGAGACCTAC
ACCGCCATGACCTTCCAGATGCAGGTGGGCGACCGGCTGGACCAGCGCCAGCTTCTGGCCGACCTCGTGGCCCAGCAATA
CAAGCGCCGCGACATGGATTTCCAGCGCGGCTCGTTCCGCGTGCGCGGTGACACCATCGAAATCTTCCCTGCCCACCTTG
AGGATGCCGCCTGGCGCATCTCGATGTTCGGCGACGAAATCGATTCCATCACCGAATTCGATCCGCTGACCGGCCAGAAA
ACCGGCGACCTGCAATCCGTCAAGATCTACGCCAATTCGCACTATGTCACCCCGCGCCCGACGCTGAACGGCGCGATCAA
GTCGATCAAGGAAGAGCTGAAGGTCCGTCTCGCCGAGCTGGAAAAAGCCGGGCGTCTGCTGGAAGCCCAGCGACTGGAGC
AGCGCACCCGCTACGATATCGAGATGCTGGAGGCGACCGGCTCCTGCGCCGGCATCGAGAACTATTCGCGTTATCTCACC
GGCCGCAATCCCGGCGAGCCGCCGCCGACGCTGTTCGAATATATCCCCGACAATGCGCTGCTGTTCATCGACGAAAGCCA
CGTCTCGGTCAGCCAGATCGGCGGCATGTATCGCGGCGACTTCAGGCGCAAGGCGACGCTGGCCGAATACGGCTTCCGCC
TGCCCTCCTGCATGGATAACCGCCCGCTGCGCTTCGAGGAATGGGATGCGATGCGCCCGCTGACGGTGGCGGTTTCGGCC
ACCCCCGGCTCGTGGGAGATGGAACAGGCCGGCGGCGTCTTCGCCGAACAGGTCATCCGCCCGACGGGCCTCATCGATCC
GCCGGTGGAAGTGCGCTCCGCCCGCAGTCAGGTGGACGATGTTCTCGGCGAAATCCGCGAGACTGCCGCCAAGGGTTACC
GCACGCTCTGTACCGTGCTGACAAAACGCATGGCCGAGGACCTGACTGAATATCTGCATGAACAGGGCGTTCGCGTACGC
TACATGCACTCGGATATCGACACGCTGGAGCGCATCGAGATCATCCGCGATCTGCGCCTCGGCGCTTTCGACGTGCTTGT
TGGTATCAACCTGTTGCGCGAAGGTCTCGATATTCCCGAATGCGGTTTCGTGGCGATCCTCGATGCCGACAAGGAAGGCT
TCCTGCGCTCCGAAACCTCGCTGATCCAGACTATCGGCCGCGCCGCCCGTAACGTCGATGGCAAGGTCATCCTTTATGCC
GACAACATCACCGGCTCGATGAAGCGGGCGATGGAGGAAACCTCCCGCCGCCGCGAAAAGCAGGTGGCATATAACGCCGA
ACACGGCATCACGCCGGAATCGGTCAAGGCGAAGATCTCCGATATTCTTGATTCAGTTTATGAGCGCGATCACGTAAGGG
CAGATATATCAGGCGCTTCCGGCAAGGGCTTCGCCGACGGCGGCCATCTCGTCGGCAATAATCTGCAGTCCCATCTCAAC
GCGCTGGAAAAATCCATGCGCGATGCCGCCGCCGATCTCGACTTCGAAAAGGCCGCCCGCCTGCGCGACGAAATCAAACG
TCTCAAGGCCGCCGAACTCGCCACCATGGACGACCCCATGGCGAAGGAAGAGGCCCGCGCCATCGAAGGCGGCGGAAAAA
ACAACAGACGCAGCCACTTGTCGATCTCCCCGCCTGAGGGGGAGACATCCGGCAGGACGGAGGCGGGCGCCGCGCCGAAC
GAAAGCGGCAAATCCCTTTTCACCAAACCCTCACTGGATGAAATGGGCCCCGGCTCAGATGCGGGAAAACCGCTGTTCCG
CAGGAACACGCTGGACGAGATGACCGTGGGCAGGACCGAAAAGCCCGTGCGCAGCGCAGTACCAGACAAGCCCGAGACCG
AATCCGGCAAACGCTTCTCACCGCTCATGGAAGGCAAACCGGAGCGTACTACCGATGATCCGCGACCGCTGGTGCGCGGC
AAGATCGGCGCGGGGTCCTATGAAGACGCCGGCGAGCAGAAGCGCAAAAGCCGGACGAAGGGCAAGACGGGCCGACCGGG
ACGGTGA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(718-759)

Type III restriction enzyme, res subunit (ResIII)

(181-305)

UvrB/uvrC motif (UVR)

(799-830)

UvrB interaction domain (UvrB_inter)

(326-415)

Helicase conserved C-terminal domain (Helicase_C)

(607-710)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.639

67.308

0.374
  uvrB Streptococcus pneumoniae R6

55.639

67.308

0.374
  uvrB Streptococcus pneumoniae D39

55.639

67.308

0.374