Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MLE07_RS05625 Genome accession   NZ_CP092892
Coordinates   1123433..1124017 (-) Length   194 a.a.
NCBI ID   WP_161974070.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain LN-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1118433..1129017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MLE07_RS05610 (MLE07_05610) - 1121177..1121806 (+) 630 WP_003502754.1 MarC family protein -
  MLE07_RS05615 (MLE07_05615) - 1121933..1123081 (+) 1149 WP_099085417.1 HPP family protein -
  MLE07_RS05620 (MLE07_05620) - 1123136..1123399 (-) 264 WP_223564850.1 hypothetical protein -
  MLE07_RS05625 (MLE07_05625) ssb 1123433..1124017 (-) 585 WP_161974070.1 single-stranded DNA-binding protein Machinery gene
  MLE07_RS05630 (MLE07_05630) uvrA 1124282..1127203 (+) 2922 WP_243016527.1 excinuclease ABC subunit UvrA Machinery gene
  MLE07_RS05635 (MLE07_05635) - 1127260..1128060 (+) 801 WP_111792300.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 20693.63 Da        Isoelectric Point: 4.7391

>NTDB_id=568828 MLE07_RS05625 WP_161974070.1 1123433..1124017(-) (ssb) [Agrobacterium tumefaciens strain LN-1]
MQLPVMMAGGQDDEMAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHTVVVFNEGLCK
VVEQYVKKGAKLYIEGQLQTRKWQDQTGNDRYSTEIVLQGFNSTLTMLDGRGEGGGAARSGGGDFGGGNDYGSGGGSSYG
GGYDQQPSSRGGSARGGSQPSGGFSNDMDDDIPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=568828 MLE07_RS05625 WP_161974070.1 1123433..1124017(-) (ssb) [Agrobacterium tumefaciens strain LN-1]
ATGCAATTGCCGGTCATGATGGCCGGCGGACAGGATGACGAGATGGCTGGTAGCGTAAACAAGGTAATTCTGATCGGGAA
CGTGGGCGCTGATCCCGAAATCCGCCGGACGCAGGATGGCCGCCCCATCGCCAACCTGCGCATCGCCACCTCGGAGACCT
GGCGTGACCGCAATAGCGGCGAGCGCAAGGAAAAGACCGAATGGCACACCGTCGTGGTTTTCAACGAAGGCCTGTGCAAG
GTCGTCGAGCAATATGTCAAGAAGGGCGCCAAGCTCTATATCGAAGGCCAGCTGCAGACCCGCAAATGGCAGGACCAGAC
CGGTAACGACCGTTACTCCACCGAAATCGTGCTGCAGGGCTTCAACTCCACGCTGACCATGCTTGACGGTCGTGGCGAGG
GCGGCGGTGCTGCCCGCAGCGGCGGTGGCGATTTCGGCGGCGGCAACGATTATGGCAGCGGCGGCGGCTCCAGCTATGGC
GGCGGTTATGACCAGCAACCCTCGTCGCGCGGCGGCTCTGCCCGTGGCGGCAGCCAGCCCTCCGGCGGCTTCTCCAATGA
CATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(19-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

44.67

100

0.454
  ssb Vibrio cholerae strain A1552

48.864

90.722

0.443