Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   MLE07_RS05630 Genome accession   NZ_CP092892
Coordinates   1124282..1127203 (+) Length   973 a.a.
NCBI ID   WP_243016527.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain LN-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1119282..1132203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MLE07_RS05610 (MLE07_05610) - 1121177..1121806 (+) 630 WP_003502754.1 MarC family protein -
  MLE07_RS05615 (MLE07_05615) - 1121933..1123081 (+) 1149 WP_099085417.1 HPP family protein -
  MLE07_RS05620 (MLE07_05620) - 1123136..1123399 (-) 264 WP_223564850.1 hypothetical protein -
  MLE07_RS05625 (MLE07_05625) ssb 1123433..1124017 (-) 585 WP_161974070.1 single-stranded DNA-binding protein Machinery gene
  MLE07_RS05630 (MLE07_05630) uvrA 1124282..1127203 (+) 2922 WP_243016527.1 excinuclease ABC subunit UvrA Machinery gene
  MLE07_RS05635 (MLE07_05635) - 1127260..1128060 (+) 801 WP_111792300.1 DUF72 domain-containing protein -
  MLE07_RS05640 (MLE07_05640) dusA 1128067..1129077 (-) 1011 WP_243016528.1 tRNA dihydrouridine(20/20a) synthase DusA -
  MLE07_RS05645 (MLE07_05645) - 1129216..1129905 (+) 690 WP_243016529.1 fumarylacetoacetate hydrolase family protein -
  MLE07_RS05650 (MLE07_05650) - 1129939..1130472 (+) 534 WP_243016530.1 gamma carbonic anhydrase family protein -
  MLE07_RS05655 (MLE07_05655) zur 1130509..1130922 (-) 414 WP_003502775.1 zinc uptake transcriptional repressor Zur -
  MLE07_RS05660 (MLE07_05660) znuB 1130919..1131737 (-) 819 WP_243016531.1 zinc ABC transporter permease subunit ZnuB -

Sequence

Protein


Download         Length: 973 a.a.        Molecular weight: 106953.96 Da        Isoelectric Point: 6.7158

>NTDB_id=568829 MLE07_RS05630 WP_243016527.1 1124282..1127203(+) (uvrA) [Agrobacterium tumefaciens strain LN-1]
MSELKTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLEMMQKPDVDQID
GLSPAISIEQKTTSRNPRSTVGTVTEIYDYMRLLFARVGVPYSPATGLPIESQTVSQMVDRILAFEEGTRLYILAPIVRG
RKGEYKKELADLMKKGFQRVKVDGQFYEIADVPALDKKYKHDIDVVVDRAVVRPDMAARLADSLETCLKLADGLAIAEFA
DKPLPPEETAAGGSANKSLNETHERVLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPSCDGLGSQQKVDENLIVPEPA
RTLRDGAIAPWAKSSSPYYNQTLEALGKAFGFKLSSKWSDLSKDAQNAILQGTEEKIEFNYQDGARSYKTVKNFEGIVPN
LERRWKETDSAWAREEIERYMSAAPCPACAGYRLKPEALAVKINKLHIGEVTQMSIRMARDWFEVLPESLNAKQNEIAVR
ILKEIRERLRFLNDVGLDYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLDTLKHLRDIG
NTVIVVEHDEDAILTADYVVDIGPAAGIHGGQVIAEGSPQEVMANPKSLTGKYLSGELGVAVPAQRRKPKKGREIKVFGA
RGNNLKNVTAAVPLGVFTAVTGVSGGGKSTFLIETLYKSAARRVMGAREIPAEHDRIDGFEFIDKVIDIDQSPIGRTPRS
NPATYTGAFTPIRDWFAGLPEAKARGYAPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDVCHGKRYNRETLDVA
FKGKSIADVLDMTVEEGVEFFAAVPAVRDKLQSLFDVGLGYIKVGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEP
TTGLHFHDVNKLLEMLHALVEQGNSVVVIEHNLEVIKTADWIIDIGPEGGTGGGEVVATGTPEDIVKVERSYTGHFLKEL
LERRPAGKREAAE

Nucleotide


Download         Length: 2922 bp        

>NTDB_id=568829 MLE07_RS05630 WP_243016527.1 1124282..1127203(+) (uvrA) [Agrobacterium tumefaciens strain LN-1]
ATGAGTGAACTGAAGACGATTTCCATCCGTGGCGCCCGCGAGCATAACCTCAAGGGCATCGATCTGGATTTGCCGCGCAA
CAAGCTGATCGTCATGACCGGCCTTTCCGGCTCGGGCAAGTCTTCGCTTGCCTTCGATACGATCTATGCCGAAGGCCAGC
GCCGTTATGTCGAAAGCCTCTCGGCCTATGCGCGCCAGTTCCTGGAGATGATGCAGAAGCCGGATGTCGACCAGATCGAC
GGCCTGTCGCCAGCAATCTCCATCGAGCAGAAGACCACCTCGCGCAACCCGCGCTCCACGGTCGGCACGGTCACCGAGAT
CTACGATTATATGCGCCTTCTCTTCGCGCGTGTCGGTGTCCCCTATTCGCCAGCCACCGGCCTGCCAATCGAAAGCCAGA
CGGTCAGCCAGATGGTCGATCGCATTCTCGCTTTCGAGGAAGGTACGCGTCTTTATATTCTTGCGCCGATAGTCCGCGGC
CGCAAAGGCGAATATAAGAAGGAACTCGCCGATCTGATGAAGAAGGGCTTCCAGCGCGTCAAGGTGGATGGCCAGTTCTA
CGAAATCGCCGACGTTCCTGCTCTCGACAAGAAATACAAGCACGACATCGACGTGGTGGTCGATCGCGCCGTCGTGCGCC
CGGACATGGCAGCACGCCTTGCCGACAGTCTCGAGACCTGCCTCAAGCTCGCCGACGGGCTGGCGATTGCGGAATTTGCT
GACAAGCCCCTGCCGCCGGAAGAAACCGCCGCCGGCGGTTCCGCCAACAAATCGCTCAACGAGACCCATGAGCGGGTGCT
GTTTTCGGAAAAATTTGCCTGCCCCGTTTCCGGCTTCACCATTCCGGAAATCGAGCCCCGGCTGTTCTCCTTCAACAACC
CCTTCGGCGCCTGCCCGAGCTGCGATGGCCTTGGCTCGCAGCAGAAGGTGGATGAAAACCTGATCGTTCCGGAACCGGCA
CGAACGCTGCGGGACGGCGCGATAGCTCCCTGGGCCAAATCATCCTCGCCCTATTACAACCAGACGCTGGAAGCACTCGG
CAAGGCCTTCGGTTTCAAGCTCTCGAGCAAATGGTCGGACCTTTCGAAGGACGCACAGAACGCCATCCTGCAGGGCACCG
AGGAAAAGATCGAATTCAACTACCAGGACGGCGCCCGCTCCTACAAGACGGTGAAGAATTTCGAAGGCATCGTGCCCAAT
CTCGAGCGTCGCTGGAAAGAGACCGACAGCGCCTGGGCGCGTGAGGAAATCGAACGCTACATGTCGGCGGCCCCCTGCCC
GGCCTGCGCCGGTTATCGCCTGAAGCCGGAAGCGCTCGCTGTCAAGATCAACAAGCTGCATATTGGTGAAGTCACCCAAA
TGTCGATCCGCATGGCGCGCGACTGGTTTGAAGTGCTGCCGGAAAGCCTCAACGCCAAGCAGAACGAAATCGCGGTCCGA
ATCCTCAAGGAAATCCGCGAACGCCTGCGCTTCCTCAATGATGTCGGGCTGGATTATCTCAGCCTGTCGCGCAATTCCGG
CACGCTTTCCGGCGGTGAAAGCCAGCGTATCCGTCTGGCCTCGCAGATCGGCTCGGGCCTCACAGGCGTTCTCTATGTTC
TCGACGAGCCCTCGATCGGCCTGCATCAGCGCGATAATGCCCGTCTACTCGATACGCTGAAACATCTGCGCGATATCGGC
AATACGGTCATCGTGGTCGAACATGATGAGGACGCCATTCTGACGGCGGATTACGTGGTAGATATCGGCCCGGCCGCCGG
CATTCATGGCGGTCAGGTGATTGCCGAAGGCTCACCGCAGGAGGTGATGGCCAATCCGAAATCGCTGACCGGCAAATATC
TCTCCGGCGAACTCGGTGTCGCCGTGCCGGCTCAGCGCCGCAAGCCCAAGAAGGGCCGCGAGATCAAGGTGTTTGGCGCA
CGCGGCAACAATCTTAAGAATGTCACGGCAGCTGTACCGCTCGGCGTCTTCACCGCGGTGACCGGCGTATCAGGCGGCGG
CAAATCCACCTTCCTGATCGAGACGCTCTACAAGTCGGCGGCGCGCCGGGTGATGGGCGCGCGCGAAATCCCGGCGGAAC
ATGACCGCATCGATGGTTTCGAATTCATCGACAAGGTCATTGATATCGACCAGTCGCCGATTGGCCGCACGCCGCGCTCC
AATCCGGCCACCTATACCGGCGCCTTTACGCCGATCCGCGACTGGTTTGCCGGCCTGCCGGAAGCCAAGGCGCGCGGTTA
TGCGCCGGGCCGTTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAGGCCTGCCAGGGTGACGGCGTCATCAAGATCGAGA
TGCACTTCCTGCCTGACGTTTACGTCACCTGCGATGTCTGCCACGGCAAGCGTTATAATCGCGAGACGCTTGACGTCGCC
TTCAAGGGCAAATCCATCGCCGACGTGCTGGATATGACGGTGGAGGAAGGCGTGGAATTCTTCGCCGCCGTGCCGGCGGT
GCGCGACAAGCTGCAATCGCTCTTCGATGTCGGCCTCGGTTATATCAAGGTCGGCCAGCAGGCCAATACGCTCTCCGGCG
GCGAAGCGCAGCGCGTCAAGCTCGCCAAGGAACTGTCCAAGCGCTCCACAGGTCGCACGCTCTACATTCTCGACGAGCCG
ACGACCGGCCTGCATTTCCACGATGTCAACAAGCTGCTCGAAATGCTGCATGCGCTTGTGGAACAGGGTAATTCCGTCGT
GGTGATCGAGCACAATCTCGAAGTCATCAAGACGGCGGACTGGATCATCGATATCGGGCCTGAGGGCGGCACGGGCGGCG
GCGAAGTGGTGGCGACCGGTACGCCGGAAGACATCGTGAAAGTCGAGCGTTCCTATACCGGTCACTTCCTGAAGGAGCTT
CTGGAGCGCCGGCCAGCCGGAAAACGGGAGGCTGCGGAGTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(133-239)

UvrA DNA-binding domain (UvrA_DNA-bind)

(311-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.158

98.356

0.562
  uvrA Streptococcus pneumoniae TIGR4

57.158

98.356

0.562
  uvrA Streptococcus pneumoniae D39

57.158

98.356

0.562