Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KIP84_RS17415 Genome accession   NZ_CP075323
Coordinates   3629018..3630430 (+) Length   470 a.a.
NCBI ID   WP_057085007.1    Uniprot ID   -
Organism   Acinetobacter sp. BHS4     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3624018..3635430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP84_RS17395 (KIP84_17400) thrC 3624276..3625415 (+) 1140 WP_209834884.1 threonine synthase -
  KIP84_RS17400 (KIP84_17405) pbpG 3625521..3626567 (-) 1047 WP_005804058.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  KIP84_RS17405 (KIP84_17410) - 3626780..3627415 (+) 636 WP_002121174.1 response regulator -
  KIP84_RS17410 (KIP84_17415) pilS 3627426..3628994 (+) 1569 WP_213688983.1 PAS domain-containing sensor histidine kinase Regulator
  KIP84_RS17415 (KIP84_17420) pilR 3629018..3630430 (+) 1413 WP_057085007.1 sigma-54 dependent transcriptional regulator Regulator
  KIP84_RS17420 (KIP84_17425) - 3630434..3631618 (-) 1185 WP_213688984.1 S41 family peptidase -
  KIP84_RS17425 (KIP84_17430) gpmI 3631634..3633181 (-) 1548 WP_199978403.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  KIP84_RS17430 (KIP84_17435) lptG 3633308..3634378 (-) 1071 WP_002121203.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52702.86 Da        Isoelectric Point: 6.5575

>NTDB_id=568790 KIP84_RS17415 WP_057085007.1 3629018..3630430(+) (pilR) [Acinetobacter sp. BHS4]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVKHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGETTLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLMHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVQQGKFRQDLFFRIHVMDIMLPPLRERGGDILL
LANHFIQKVCTEWGISSKQLTASAETYLLQQDFPGNVRELRNMIERAITLSDDECIDLKHLAPPVRCNSVSPQIATKQVN
QTLTAQTHPKFPIEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEMGEEV

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=568790 KIP84_RS17415 WP_057085007.1 3629018..3630430(+) (pilR) [Acinetobacter sp. BHS4]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAGACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTTACTCAGTTTCATTACGATGCGTGCT
TGACCGATTTAAACTTACCCGATGGTAGTGGTTTGGAATTGGTTAAACATGTTTCTCAAACTTATCCTCACACACCCATT
GCTGTTTTAACCGCATACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCTGGAGCTTTTGATTTTGTCAGCAAACC
TATTAATCAAATTCATTTAGATCAGCTATTAAAAAAAGCGCTTAACCAGCCAAAACCAGAACATGAGTTCGGTGAAACAA
CTCTAGAGAATGACTTATTAATTGGGCGCTCACCACCTATACAAAACTTACGGACAGCTATTAAAAAAATAGCCCGCTCC
CAAGCACCTGTGTTTGTTACAGGTGAGTCTGGTACCGGTAAAGAAGTTGTTGCTAATCTTATGCACCGCTTAAGTAACCG
CAGTGAAGGACCATTTATTGCAATTAACTGCGGAGCAATCCCAACTGAGCTCATGGAAAGTGAACTTTTCGGACATAAAA
AAGGGAGCTTTACTGGAGCAACCCAAGACAAACAAGGCCTGATTTTATCAGCTCATGGCGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCTTTAAGTATGCAGGTTAAATTGCTTCGGGCAGTACAAGAGAAAAAGATTCGTCCTGTAGGTTCAGA
TCAGGAAATTGATGTAGATTTTCGGGTGATTAGCGCCAGCCACCAAGATTTAGATTTGTTAGTCCAACAAGGTAAATTCC
GTCAGGACTTATTCTTCCGTATCCATGTTATGGATATCATGTTGCCACCACTGCGTGAACGTGGTGGAGATATTTTGCTC
TTAGCCAATCATTTTATTCAAAAGGTTTGTACGGAATGGGGAATTTCAAGCAAACAATTAACAGCGAGCGCTGAAACTTA
CTTATTGCAGCAAGATTTTCCGGGTAATGTTCGTGAATTAAGAAATATGATTGAACGAGCTATTACTTTAAGTGATGATG
AATGTATTGATTTGAAACACTTGGCACCTCCTGTTAGATGCAATAGTGTTAGTCCGCAAATCGCAACTAAACAGGTAAAT
CAAACGCTAACTGCTCAAACTCATCCAAAATTTCCAATAGAAGGTTTAGAACGCTACTTAGAAAATATCGAAAAAGACAT
TTTACTAAATGCACTAAACATGACGCATTGGAATCGAACTTTGGCAGCTAAAAAGCTAGGAATGACATTTCGTTCTTTGC
GCTATCGACTTAAAAAATTTGGTTTAGATACCGAAATGGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Response regulator receiver domain (Response_reg)

(8-116)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

86.469

100

0.87
  pilR Pseudomonas aeruginosa PAK

50.98

97.66

0.498