Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   KIP84_RS17410 Genome accession   NZ_CP075323
Coordinates   3627426..3628994 (+) Length   522 a.a.
NCBI ID   WP_213688983.1    Uniprot ID   -
Organism   Acinetobacter sp. BHS4     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3622426..3633994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP84_RS17390 (KIP84_17395) - 3622920..3624221 (+) 1302 WP_002121263.1 homoserine dehydrogenase -
  KIP84_RS17395 (KIP84_17400) thrC 3624276..3625415 (+) 1140 WP_209834884.1 threonine synthase -
  KIP84_RS17400 (KIP84_17405) pbpG 3625521..3626567 (-) 1047 WP_005804058.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  KIP84_RS17405 (KIP84_17410) - 3626780..3627415 (+) 636 WP_002121174.1 response regulator -
  KIP84_RS17410 (KIP84_17415) pilS 3627426..3628994 (+) 1569 WP_213688983.1 PAS domain-containing sensor histidine kinase Regulator
  KIP84_RS17415 (KIP84_17420) pilR 3629018..3630430 (+) 1413 WP_057085007.1 sigma-54 dependent transcriptional regulator Regulator
  KIP84_RS17420 (KIP84_17425) - 3630434..3631618 (-) 1185 WP_213688984.1 S41 family peptidase -
  KIP84_RS17425 (KIP84_17430) gpmI 3631634..3633181 (-) 1548 WP_199978403.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59084.59 Da        Isoelectric Point: 6.2829

>NTDB_id=568789 KIP84_RS17410 WP_213688983.1 3627426..3628994(+) (pilS) [Acinetobacter sp. BHS4]
MQFPLNSSLSNTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPALYSYTLLGYSLLSLLQLLCFKFIATQATRQ
LILFFVVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPSQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDAEQQNTLRNMISKQTKRIDSIVQDTLGLARSERTHPIQIELNDFIKTLLDEDLSDVK
HAIQLKSFDLSLKLLFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECSIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=568789 KIP84_RS17410 WP_213688983.1 3627426..3628994(+) (pilS) [Acinetobacter sp. BHS4]
ATGCAATTTCCCTTAAACTCATCCTTGTCCAATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGTCTAAATATTATTTTGGTTTTAACCGATGCTCAAATCGATAATAGTCTACAACAACCTGCTTTATATTCTT
ATACACTACTCGGCTATTCGCTATTAAGCCTTCTTCAACTTTTATGCTTTAAGTTTATTGCCACTCAGGCAACAAGGCAG
CTCATTTTATTTTTTGTAGTTGATATTATCTGTCTGAGTTTACTTACATTTTCTGTAGGTGAACCAAATCTTCAACTCAG
CTTGCTCTATGTTATTGCCATATTTACTTCGGCCATTTTACTTAGCGCAAGAATGTCGTTGCTCATTACATTACTTGCAG
TCATTGCGGTTATTTACCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAATAGTGCCTTA
TTGGCCTTTTTATTTTTTGTCGTACACGGAATCGGACAAATTGCGGTCCAGCGCTTTAAATTACTTGAAGCACTAACTTT
CCACCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATCTTGGAACAAATTGAAGAGGGCTATTTAGTTC
TAGATGAAAACTACGACATTGTTTTAAGTAATCCAGCCGCCTGCTCTCTTTTAGGAATTCCATCTCAATTTGCCAGTGAA
AAATATCCATTAGCAAAATGGCATGCTGACTTATTTGAAATTCTTAAGTTTGATAACTTAAAAGAAGGTGATCGATTTAT
TTTTGAGTCTCGACTGTCGGCTTATTCTATTAATATTAAAGTGCAACATCTTTTGGTGCCACAGCAAGCATTGACGCTAC
TCATTTTACAAGATGCGCAGCAGATTAATCAGCAAGCTCAACAACTCAAACTTGCCGCTTTAGGCCAACTATCAGCAAGT
ATTGCACATGAGATCCGTAATCCTCTTGCAGCTATTGTTCAAGCAAATGAATTACTCAAAGATAGTGACGCGGAACAGCA
AAATACTTTGCGCAATATGATTAGCAAGCAAACGAAACGCATTGATAGTATTGTTCAAGACACGTTAGGACTTGCCCGCA
GTGAAAGAACGCATCCAATCCAGATTGAATTAAACGACTTCATAAAAACGTTATTAGATGAAGATTTATCTGATGTTAAA
CATGCGATCCAGCTAAAAAGTTTTGATTTATCCTTAAAGCTATTGTTTGATGAAAAGCAGCTCAGACAAGTCCTCATTAA
CCTTGTTAGAAACGCTCTACGCCACAATGCACCCGATTCGCCCTATGTTCTGATCAATATCCATTCGCAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGCGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCTCAATAATATATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-516)

PAS fold (PAS)

(203-250)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.253

100

0.943