Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   KIP84_RS15480 Genome accession   NZ_CP075323
Coordinates   3216499..3216903 (-) Length   134 a.a.
NCBI ID   WP_213688857.1    Uniprot ID   -
Organism   Acinetobacter sp. BHS4     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3211499..3221903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP84_RS15450 (KIP84_15455) - 3211583..3211852 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  KIP84_RS15455 (KIP84_15460) rapZ 3211849..3212700 (-) 852 WP_002117179.1 RNase adapter RapZ -
  KIP84_RS15460 (KIP84_15465) panC 3212724..3213572 (-) 849 WP_063098126.1 pantoate--beta-alanine ligase -
  KIP84_RS15465 (KIP84_15470) panB 3213576..3214385 (-) 810 WP_213688855.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  KIP84_RS15470 (KIP84_15475) folK 3214431..3214913 (-) 483 WP_014208398.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  KIP84_RS15475 (KIP84_15480) pcnB 3214910..3216373 (-) 1464 WP_213688856.1 polynucleotide adenylyltransferase PcnB -
  KIP84_RS15480 (KIP84_15485) comEA 3216499..3216903 (-) 405 WP_213688857.1 ComEA family DNA-binding protein Machinery gene
  KIP84_RS15485 (KIP84_15490) mazG 3216872..3217678 (-) 807 WP_213688858.1 nucleoside triphosphate pyrophosphohydrolase -
  KIP84_RS15490 (KIP84_15495) - 3217791..3218564 (+) 774 WP_213688859.1 SDR family oxidoreductase -
  KIP84_RS15495 (KIP84_15500) - 3219086..3220399 (+) 1314 WP_228308313.1 hypothetical protein -
  KIP84_RS15500 (KIP84_15505) - 3220419..3220829 (+) 411 WP_063098121.1 DUF1425 domain-containing protein -
  KIP84_RS15505 (KIP84_15510) lpoB 3220883..3221485 (+) 603 WP_063098120.1 penicillin-binding protein activator LpoB -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15450.77 Da        Isoelectric Point: 10.4871

>NTDB_id=568778 KIP84_RS15480 WP_213688857.1 3216499..3216903(-) (comEA) [Acinetobacter sp. BHS4]
MQLSMNLWKNKHNIFIVLFWSLISSIFVQAQSFDQNFKEWKAKQQMYDQKLSMQQASHSNSPKSSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIIEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=568778 KIP84_RS15480 WP_213688857.1 3216499..3216903(-) (comEA) [Acinetobacter sp. BHS4]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAGCATAACATTTTCATTGTTTTATTTTGGAGCCTGATTTCTTCAATCTT
TGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCTAAACAGCAGATGTATGATCAGAAGTTGAGCATGC
AACAAGCCTCTCATTCTAATAGTCCAAAAAGCTCAGTTATGACTGATTCGTCAGGGCAAATACACTTGAATCAAGCCAAT
ATTGATGAGCTTCAAAAGCTAAAAGGGATTGGTGAGAAAAAGGCACAAGCGATTATAGAATACCGACAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGTATTGGTCCAGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

69.343

100

0.709
  comEA Acinetobacter baumannii D1279779

68.613

100

0.701
  comEA Acinetobacter baylyi ADP1

41.129

92.537

0.381