Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   MMB17_RS03760 Genome accession   NZ_CP092848
Coordinates   829130..831853 (+) Length   907 a.a.
NCBI ID   WP_238313217.1    Uniprot ID   A0ABQ4TCV6
Organism   Methylobacterium organophilum strain WPA_B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 824130..836853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMB17_RS03725 (MMB17_03725) - 824357..824878 (+) 522 WP_241101116.1 ureidoglycolate lyase -
  MMB17_RS03730 (MMB17_03730) - 824888..826024 (-) 1137 WP_241101117.1 alpha/beta fold hydrolase -
  MMB17_RS03735 (MMB17_03735) - 826122..826649 (-) 528 WP_238313211.1 ankyrin repeat domain-containing protein -
  MMB17_RS03740 (MMB17_03740) - 826791..827273 (-) 483 WP_241101118.1 VOC family protein -
  MMB17_RS03745 (MMB17_03745) - 827285..827701 (-) 417 WP_241101119.1 DoxX family protein -
  MMB17_RS03750 (MMB17_03750) - 827808..828713 (+) 906 WP_241101120.1 LysR family transcriptional regulator -
  MMB17_RS03755 (MMB17_03755) - 828742..828996 (-) 255 WP_241101121.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  MMB17_RS03760 (MMB17_03760) uvrB 829130..831853 (+) 2724 WP_238313217.1 excinuclease ABC subunit UvrB Machinery gene
  MMB17_RS03765 (MMB17_03765) - 832078..833850 (+) 1773 WP_241101122.1 ABC transporter ATP-binding protein -
  MMB17_RS03770 (MMB17_03770) - 833914..834792 (+) 879 WP_241101123.1 aldose 1-epimerase family protein -
  MMB17_RS03775 (MMB17_03775) - 834794..835141 (-) 348 WP_238313220.1 DUF2293 domain-containing protein -
  MMB17_RS03780 (MMB17_03780) - 835322..835588 (+) 267 WP_238313222.1 hypothetical protein -
  MMB17_RS03785 (MMB17_03785) - 835623..836585 (+) 963 WP_241101124.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 907 a.a.        Molecular weight: 100420.02 Da        Isoelectric Point: 6.1098

>NTDB_id=568668 MMB17_RS03760 WP_238313217.1 829130..831853(+) (uvrB) [Methylobacterium organophilum strain WPA_B]
MPTPKKPSAKPSPKARSAAAKADKPELKPLDEHLAALLNPALNRERLKVAEPAPAAGKGRGRKAAASGRAEGFAEAPQAG
FTLRDDAAEIDPHLAQALGLTPPDDGPAPETAPAPDEDAPSLATEGVSATVEALEKLLTEGNPLFKNGQAWVPHRPERPQ
KSEGGVKFTLKSEFTPAGDQPTAIADLVAGVRQQERDQVLLGVTGSGKTFTMAKVIEETQRPALILAPNKTLAAQLYGEF
KSFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHAATRALLERDDVIIVASVSCIYGIGSVETYTAM
SFTVSLGERIEQRQLIADLVALQYKRIQSDFARGTFRVRGDVIELWPAHLEDRGWRIGLFGDEVESIVEFDPLTGKKINE
LKFVKVYANSHYVTPRPTLQQAIKGIKEELRLRVAELTKMGRLIEAQRLEQRCTFDIEMIEATGACNGIENYSRYLTGRK
PGEPPPTLFEYLPDNALVFTDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSCLDNRPLRFEEWDAMRPQSVHVSATPG
KWEMERTEGVFAEQVIRPTGLVDPVIEIRPARSQVDDLLGEVRAVAQAGYRTLVTTLTKRMAEDLTEYLHENSVRVRYMH
SDIDTLERIEIIRDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNAEARCILYADSI
TGSMERAMAETERRRQKQLAYNAEHGITPQSVKRGIADILESVYERDHVRVDTGLAKDAITVGHNLKAVMADLEKRMRAA
AADLDFEEAARLRDELKRLQATELLVADDPMAHQGAIEREAGRYGEKGRSRIAKPTLDNMGPGTDRELPVGGALPSPTWQ
ERPKARSTQGLGGQKPRYKGGGGRKRG

Nucleotide


Download         Length: 2724 bp        

>NTDB_id=568668 MMB17_RS03760 WP_238313217.1 829130..831853(+) (uvrB) [Methylobacterium organophilum strain WPA_B]
ATGCCGACTCCGAAGAAGCCCAGCGCCAAGCCGAGCCCCAAGGCGCGTTCCGCCGCGGCCAAGGCCGACAAGCCCGAGCT
GAAGCCGCTCGACGAGCATCTCGCGGCCCTGCTCAACCCGGCGCTGAATCGCGAGCGGTTGAAGGTGGCCGAGCCTGCAC
CCGCCGCGGGCAAGGGGCGGGGCCGGAAGGCCGCCGCGTCCGGGCGGGCGGAGGGCTTCGCCGAGGCGCCGCAGGCGGGA
TTCACCCTGCGCGACGACGCCGCCGAGATCGACCCGCATCTGGCCCAGGCCCTCGGCCTGACACCCCCCGACGACGGGCC
GGCCCCGGAGACGGCGCCCGCGCCCGACGAGGACGCGCCGTCGCTCGCCACCGAGGGCGTCTCGGCCACGGTGGAGGCGC
TGGAGAAGCTGCTCACCGAGGGCAACCCGCTCTTCAAGAACGGCCAGGCCTGGGTGCCGCACCGGCCCGAGCGGCCGCAG
AAATCGGAAGGCGGCGTGAAGTTCACGCTGAAATCCGAGTTCACTCCCGCCGGCGACCAGCCCACCGCCATCGCCGACCT
GGTGGCCGGCGTGAGGCAGCAGGAGCGCGACCAGGTGCTGCTCGGCGTCACCGGCTCGGGCAAGACCTTCACCATGGCCA
AGGTGATCGAGGAGACCCAGCGCCCGGCCCTGATCCTGGCCCCGAACAAGACGTTGGCCGCGCAGCTCTACGGCGAGTTC
AAGAGCTTTTTCCCGGACAATGCGGTCGAGTACTTCGTCTCCTACTACGATTATTACCAGCCCGAGGCTTATGTCCCGCG
CTCCGATACGTTTATCGAGAAGGAAAGCTCGATCAACGAGCAGATCGACCGCATGCGCCACGCCGCCACCCGCGCTCTGC
TGGAGCGAGACGACGTGATCATCGTGGCCTCGGTGTCCTGCATCTACGGTATCGGCTCGGTCGAGACCTACACGGCGATG
TCCTTCACCGTGTCGCTGGGCGAGCGCATCGAGCAGCGCCAGCTCATCGCCGACCTCGTGGCGCTGCAATACAAGCGGAT
CCAGTCCGATTTCGCCCGCGGCACCTTCCGGGTGCGCGGCGACGTGATCGAGCTGTGGCCGGCCCACTTGGAGGATCGCG
GCTGGCGCATCGGCCTGTTCGGCGACGAGGTCGAATCCATCGTCGAGTTCGATCCGCTGACCGGCAAGAAGATCAACGAG
CTGAAGTTCGTGAAGGTCTACGCCAACTCGCACTACGTCACGCCGCGCCCGACGCTGCAGCAGGCGATCAAGGGCATCAA
GGAGGAGCTGCGGCTGCGCGTCGCCGAGCTGACCAAGATGGGCCGCCTGATCGAGGCGCAGCGGCTGGAGCAGCGCTGCA
CCTTCGACATCGAGATGATCGAGGCCACCGGCGCCTGCAACGGCATCGAGAACTACTCGCGCTATCTCACCGGGCGGAAG
CCCGGCGAGCCGCCGCCGACCCTGTTCGAGTACCTGCCGGACAACGCCCTCGTCTTCACCGACGAGAGCCACGTCACCGT
GCCGCAGATCGGCGGCATGTATCGGGGCGACTTCCGCCGCAAGGCGACGCTGGCCGAATACGGCTTCCGCCTGCCCTCCT
GCCTCGACAACCGGCCGCTCCGCTTCGAGGAATGGGACGCGATGCGGCCCCAGTCGGTCCACGTCTCGGCCACGCCGGGC
AAGTGGGAGATGGAGCGCACCGAGGGCGTCTTCGCCGAGCAGGTGATCCGCCCGACCGGGCTGGTCGATCCGGTGATCGA
AATCCGCCCGGCCCGCTCCCAGGTGGACGACCTTCTGGGAGAGGTCCGCGCGGTGGCCCAGGCCGGCTACCGGACCCTGG
TCACCACCCTGACCAAGCGCATGGCCGAGGACCTGACCGAGTACCTGCACGAGAACTCCGTGCGGGTGCGCTACATGCAC
TCGGACATCGACACCCTGGAGCGCATCGAGATCATCCGCGACCTGCGCCTCGGCGCCTTCGACGTGCTGATCGGCATCAA
CCTGCTGCGCGAGGGCCTCGACATCCCGGAATGCGCCCTTGTCGCGATCCTCGACGCCGACAAGGAGGGATTCCTGCGCT
CGGAGACCTCGCTGATCCAGACCATCGGCCGCGCGGCCCGCAACGCGGAGGCCCGCTGCATCCTCTACGCGGACAGCATC
ACCGGCTCGATGGAGCGGGCGATGGCGGAGACCGAGCGGCGCCGCCAGAAGCAGCTCGCCTACAACGCCGAGCACGGCAT
CACGCCGCAATCGGTCAAGCGCGGCATCGCCGACATCCTGGAGAGCGTCTACGAGCGCGATCACGTCCGCGTCGATACGG
GACTGGCCAAGGACGCGATCACCGTCGGGCACAATCTCAAGGCGGTCATGGCCGATCTCGAGAAGCGCATGCGGGCGGCC
GCCGCCGATCTCGACTTCGAGGAGGCTGCGCGCCTGCGCGACGAGCTCAAGCGGCTGCAGGCGACCGAGCTGCTGGTCGC
CGACGATCCCATGGCCCATCAGGGCGCCATCGAGCGCGAGGCGGGCCGCTACGGCGAGAAGGGCCGCTCCCGCATCGCCA
AGCCGACCCTCGACAATATGGGGCCGGGCACGGACCGCGAATTGCCGGTGGGGGGCGCCCTGCCCTCCCCGACCTGGCAG
GAGCGGCCCAAGGCCCGCTCGACCCAGGGGCTCGGCGGCCAGAAGCCGCGCTACAAGGGCGGCGGCGGCCGCAAGCGGGG
ATAG

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(788-821)

Ultra-violet resistance protein B (UvrB)

(715-756)

Helicase conserved C-terminal domain (Helicase_C)

(606-708)

UvrB interaction domain (UvrB_inter)

(324-412)

Type III restriction enzyme, res subunit (ResIII)

(178-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

54.932

72.657

0.399
  uvrB Streptococcus pneumoniae R6

54.932

72.657

0.399
  uvrB Streptococcus pneumoniae D39

54.932

72.657

0.399