Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   MMB16_RS24405 Genome accession   NZ_CP092846
Coordinates   5147522..5148193 (-) Length   223 a.a.
NCBI ID   WP_003120781.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain ISS SRV-K     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 5142522..5153193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMB16_RS24380 (MMB16_24380) - 5143295..5143747 (-) 453 WP_003114181.1 protein YgfX -
  MMB16_RS24385 (MMB16_24385) - 5143731..5143985 (-) 255 WP_003085532.1 succinate dehydrogenase assembly factor 2 -
  MMB16_RS24390 (MMB16_24390) - 5144258..5145202 (+) 945 WP_003101947.1 folate-binding protein YgfZ -
  MMB16_RS24395 (MMB16_24395) - 5145303..5146139 (+) 837 WP_003114179.1 HDOD domain-containing protein -
  MMB16_RS24400 (MMB16_24400) - 5146147..5147529 (-) 1383 WP_003120780.1 sensor histidine kinase -
  MMB16_RS24405 (MMB16_24405) ciaR 5147522..5148193 (-) 672 WP_003120781.1 response regulator Regulator
  MMB16_RS24410 (MMB16_24410) - 5148404..5149687 (+) 1284 WP_003101939.1 OprD family porin -
  MMB16_RS24415 (MMB16_24415) - 5149717..5150700 (+) 984 WP_003085519.1 tripartite tricarboxylate transporter substrate binding protein -
  MMB16_RS24420 (MMB16_24420) - 5150749..5151219 (+) 471 WP_003101933.1 tripartite tricarboxylate transporter TctB family protein -
  MMB16_RS24425 (MMB16_24425) - 5151230..5152747 (+) 1518 WP_003120784.1 tripartite tricarboxylate transporter permease -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24416.27 Da        Isoelectric Point: 5.1881

>NTDB_id=568619 MMB16_RS24405 WP_003120781.1 5147522..5148193(-) (ciaR) [Pseudomonas aeruginosa strain ISS SRV-K]
MRILLVEDHPQLAESVVQALKGAGWTVDLLQDGVAADLALASEEYALAILDVGLPRMDGFEVLARLRGRGKTLPVLMLTA
RGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVLGGEQLQRCGALVYDLGTRRFSLDEQPLTLTSREQAVLEA
MIARPGRVMSKEQLAAQVFGLDEEASADAIEIYVHRLRKKLEGGAVRIVTFRGLGYLLEALGD

Nucleotide


Download         Length: 672 bp        

>NTDB_id=568619 MMB16_RS24405 WP_003120781.1 5147522..5148193(-) (ciaR) [Pseudomonas aeruginosa strain ISS SRV-K]
ATGCGCATCCTTCTGGTGGAAGATCATCCGCAGCTCGCCGAAAGCGTGGTCCAGGCGCTCAAGGGCGCCGGCTGGACGGT
AGACCTGCTGCAGGACGGGGTGGCCGCCGACCTGGCTCTGGCCAGCGAGGAGTACGCCCTGGCGATCCTCGACGTCGGCC
TGCCGCGGATGGACGGCTTCGAGGTGCTGGCGCGCCTGCGCGGGCGCGGCAAGACCCTGCCGGTGCTGATGCTGACTGCG
CGCGGCGAGGTGAAGGACCGGGTGCACGGCCTCAATCTCGGCGCCGACGACTACCTGGCAAAGCCTTTCGAACTGTCCGA
GCTGGAGGCGCGGGTCAAGGCCCTGCTGCGCCGCAGCGTGCTCGGTGGCGAACAGTTGCAGCGCTGCGGCGCCCTGGTCT
ACGACCTCGGCACCCGGCGCTTCAGCCTCGACGAGCAGCCGCTGACCCTGACCTCGCGGGAACAGGCGGTGCTGGAAGCG
ATGATCGCCCGTCCGGGGCGGGTGATGAGCAAGGAGCAACTGGCCGCCCAGGTCTTCGGCCTGGACGAGGAGGCCAGCGC
CGACGCCATCGAGATCTACGTCCACCGCCTGCGCAAGAAGCTGGAAGGCGGCGCCGTGCGCATAGTCACCTTCCGCGGCC
TCGGCTACCTGCTGGAGGCGCTGGGTGACTGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-218)

Response regulator receiver domain (Response_reg)

(3-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

37.668

100

0.377
  ciaR Streptococcus pneumoniae D39

37.668

100

0.377
  ciaR Streptococcus pneumoniae R6

37.668

100

0.377
  ciaR Streptococcus pneumoniae TIGR4

37.668

100

0.377
  covR Lactococcus lactis subsp. lactis strain DGCC12653

37.668

100

0.377