Detailed information NTG0568581

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: KI617_RS16110
• Genome accession: NZ_CP075191
• Coordinates: 3344291..3345649 (-)
• Length: 452 a.a.
• NCBI ID: WP_226447979.1
• Uniprot ID: -
• Organism: Ferribacterium limneticum strain 128
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3339291..3350649

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KI617_RS16095 (KI617_16065)	-	3340682..3342526 (+)	1845	WP_226447973.1	phosphoenolpyruvate carboxykinase (GTP)	-
KI617_RS16100 (KI617_16070)	-	3342588..3343748 (+)	1161	WP_226447975.1	pyridoxal phosphate-dependent aminotransferase	-
KI617_RS16105 (KI617_16075)	ampD	3343725..3344291 (-)	567	WP_226447977.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
KI617_RS16110 (KI617_16080)	pilR	3344291..3345649 (-)	1359	WP_226447979.1	sigma-54 dependent transcriptional regulator	Regulator
KI617_RS16115 (KI617_16085)	-	3345607..3347220 (-)	1614	WP_226447980.1	nitrogen regulation protein NR(II)	-
KI617_RS16120 (KI617_16090)	-	3347220..3347456 (-)	237	WP_226447982.1	PP0621 family protein	-
KI617_RS16125 (KI617_16095)	-	3347831..3349885 (+)	2055	WP_226447984.1	TonB-dependent receptor	-

Sequence

Protein

• Length: 452 a.a.
• Molecular weight: 49435.53 Da
• Isoelectric Point: 4.8569

>NTDB_id=568581 KI617_RS16110 WP_226447979.1 3344291..3345649(-) (pilR) [Ferribacterium limneticum strain 128]
MSVVRTERRPRGELSRVLVVDDEPDIRELIDLTLARMGLATECVGSVAEAKAALEADDFQLCLTDMRLPDGEGLEIVRLI
TEHYPQTPVAVITAYGSAGNAVAALKAGAFDYLAKPVGLEQLRALIKSALRLPGGGQGDDEDPLQSLIGDSPSMQQVRAM
IEKLARSQAPIYISGESGSGKELGARLIHSRSARAAGPFVPVNCGAIPENLMESEFFGYRKGAFTGADSEREGFFQAANG
GTLFLDEVADLPLAMQVKLLRAIQEKRVRKVGSVAEEPVDVRIICATHRNLRDLVEKGGFRQDLYYRLNVIELRMPPLRE
RLEDIAPLVDAILRRVFGEATPKLSNGALKALEFYSFPGNVRELENILERATALCAGDTIEVDDLHLGPEEMPGGEAPGR
GSETLDEYLNRLERQAILEALQKAEGNRTAAARLLGVTFRSMRYRLERLGIE

Nucleotide

• Length: 1359 bp

>NTDB_id=568581 KI617_RS16110 WP_226447979.1 3344291..3345649(-) (pilR) [Ferribacterium limneticum strain 128]
GTGTCAGTTGTCAGAACCGAACGGCGTCCGCGCGGCGAATTAAGCCGGGTTCTCGTTGTTGATGACGAGCCCGATATCCG
TGAACTGATCGATTTAACCTTGGCTCGCATGGGCCTGGCCACCGAGTGTGTGGGTTCGGTGGCTGAGGCGAAAGCCGCGC
TTGAGGCCGATGATTTTCAGCTCTGCCTGACCGATATGCGCCTGCCGGATGGCGAGGGGCTGGAAATCGTTCGCCTCATC
ACCGAGCATTACCCCCAAACGCCGGTAGCTGTCATTACCGCCTATGGCAGCGCTGGAAATGCCGTCGCCGCCTTGAAGGC
GGGGGCTTTCGACTATCTGGCCAAGCCGGTCGGGCTTGAGCAACTACGCGCGCTGATCAAGTCTGCCTTACGTTTGCCAG
GCGGCGGGCAGGGGGACGATGAAGATCCCCTGCAATCGCTGATTGGCGACTCCCCGAGCATGCAGCAGGTACGGGCGATG
ATCGAGAAGCTGGCGCGCAGCCAGGCGCCGATCTACATTTCCGGCGAGTCCGGCAGCGGCAAGGAGTTGGGTGCCCGATT
GATCCATAGCCGCAGCGCTCGAGCGGCAGGGCCCTTCGTTCCGGTTAACTGCGGGGCGATTCCGGAAAACCTGATGGAAA
GCGAATTCTTCGGTTATCGGAAAGGGGCATTTACCGGCGCCGATAGTGAGCGCGAGGGATTTTTCCAGGCCGCCAACGGG
GGTACGCTGTTCCTCGACGAAGTGGCTGATCTGCCGCTGGCCATGCAGGTCAAGCTGCTGCGTGCCATTCAGGAAAAACG
GGTGCGCAAGGTGGGTAGTGTGGCCGAAGAGCCGGTAGACGTCCGGATCATCTGTGCGACCCATCGTAATCTGCGCGATC
TGGTCGAAAAGGGCGGCTTCCGGCAGGACTTGTATTACCGGCTGAACGTGATTGAACTCCGCATGCCGCCCTTGCGCGAA
CGCCTGGAGGATATTGCCCCGCTGGTTGATGCCATCCTGCGGCGAGTTTTCGGGGAGGCTACGCCAAAACTCTCAAACGG
CGCGCTGAAAGCGCTGGAGTTCTATTCCTTTCCGGGCAACGTGCGCGAGCTGGAAAACATCCTGGAGCGAGCAACGGCCC
TTTGCGCTGGCGATACCATCGAAGTCGACGACCTGCATCTTGGTCCCGAGGAAATGCCGGGTGGTGAAGCGCCGGGGCGG
GGCAGCGAAACTCTGGATGAATATCTGAATCGCCTCGAGCGTCAGGCCATTCTGGAAGCCTTGCAGAAGGCCGAGGGGAA
CCGTACGGCGGCGGCCCGTCTGCTTGGCGTGACCTTCCGCTCCATGCGCTACCGGCTTGAGCGTCTGGGCATCGAGTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (17-126)

• Bacterial regulatory protein, Fis family (HTH_8) (411-448)

• Sigma-54 interaction domain (Sigma54_activat) (147-313)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	59.193	98.673	0.584
pilR	Acinetobacter baumannii strain A118	46.405	100	0.471
luxO	Vibrio cholerae strain A1552	37.753	98.451	0.372