Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KI613_RS03950 Genome accession   NZ_CP075190
Coordinates   823561..824916 (+) Length   451 a.a.
NCBI ID   WP_310494838.1    Uniprot ID   -
Organism   Ferribacterium limneticum strain 76     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 818561..829916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI613_RS03925 (KI613_03905) - 818753..819175 (+) 423 WP_226403911.1 hypothetical protein -
  KI613_RS03930 (KI613_03910) - 819227..820347 (+) 1121 WP_226399398.1 IS3 family transposase -
  KI613_RS03935 (KI613_03915) - 820422..820844 (+) 423 WP_226403912.1 hypothetical protein -
  KI613_RS21350 (KI613_03920) - 820941..821327 (-) 387 WP_404826978.1 helix-turn-helix transcriptional regulator -
  KI613_RS21210 - 821760..821990 (+) 231 WP_264181452.1 PP0621 family protein -
  KI613_RS03945 (KI613_03925) - 821990..823603 (+) 1614 WP_226403914.1 nitrogen regulation protein NR(II) -
  KI613_RS03950 (KI613_03930) pilR 823561..824916 (+) 1356 WP_310494838.1 sigma-54 dependent transcriptional regulator Regulator
  KI613_RS03955 (KI613_03935) ampD 824916..825482 (+) 567 WP_226403915.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  KI613_RS03960 (KI613_03940) - 825459..826619 (-) 1161 WP_226403916.1 pyridoxal phosphate-dependent aminotransferase -
  KI613_RS03965 (KI613_03945) - 826693..828537 (-) 1845 WP_226403917.1 phosphoenolpyruvate carboxykinase (GTP) -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 49497.70 Da        Isoelectric Point: 5.1938

>NTDB_id=568550 KI613_RS03950 WP_310494838.1 823561..824916(+) (pilR) [Ferribacterium limneticum strain 76]
MSVARTERRPRGEMSRVLVIDDEADIRELIDLTLVRMGLATVCVGSVAEARAALDSDVFQLCLTDMRLPDGDGLEIVRCI
TEHHQQTPVAVITAYGSAENAVAALKAGAFDYLAKPVGLEQLRALVKSALRLPGGGQDSENPLQSLIGDSPSMQQVRAMI
EKLARSQAPIYISGESGSGKELAARLIHGRSARAAGTFVPVNCGAIPENLMESEFFGYRKGAFTGADSEREGFFQAAHGG
TLFLDEVADLPLAMQVKLLRAIQEKRVRKVGSVAEEPVDVRIICATHKNLRELVDRGAFRQDLYYRLNVIELRMPPLRER
MEDIVPLVDAILRRVFGDAPPKLSSGAVKALSFYSFPGNVRELENILERATALCSGDLIEVEDLHLGPEEMSGVEDQGRG
SETLDEYLNRLERQAILEALQKAEGNRTAAARLLGVTFRSMRYRLERLGIE

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=568550 KI613_RS03950 WP_310494838.1 823561..824916(+) (pilR) [Ferribacterium limneticum strain 76]
GTGTCTGTTGCCAGAACCGAACGGCGCCCGCGCGGCGAAATGAGCCGGGTCCTCGTCATTGACGACGAGGCGGATATTCG
CGAACTGATCGATCTGACGCTGGTCCGCATGGGGCTGGCTACAGTGTGCGTCGGCTCGGTTGCCGAGGCGCGGGCTGCCC
TCGATAGCGATGTCTTTCAGCTTTGCCTGACCGATATGCGCCTGCCGGATGGCGATGGTCTGGAGATTGTTCGCTGTATT
ACCGAACATCATCAGCAGACGCCGGTGGCCGTGATTACTGCTTACGGCAGTGCGGAAAATGCAGTGGCTGCCCTGAAGGC
CGGTGCCTTCGATTATTTGGCCAAGCCGGTGGGCCTTGAGCAGTTGCGCGCCCTCGTCAAGTCGGCACTGCGTCTGCCGG
GTGGCGGGCAGGATAGCGAGAATCCGCTGCAGTCTCTGATCGGCGATTCGCCAAGCATGCAACAGGTACGGGCGATGATC
GAAAAGCTGGCGCGTAGCCAGGCGCCAATTTATATTTCCGGAGAGTCGGGTAGCGGCAAGGAACTGGCGGCACGGCTGAT
CCATGGCCGAAGCGCGCGGGCGGCCGGCACTTTTGTCCCGGTGAACTGCGGGGCGATTCCGGAAAACCTCATGGAAAGCG
AGTTCTTTGGCTATCGCAAAGGCGCCTTTACCGGTGCCGATAGTGAGCGCGAGGGCTTTTTCCAGGCCGCCCATGGTGGC
ACGCTATTCCTTGATGAAGTCGCCGATCTGCCGCTGGCCATGCAGGTCAAGCTGTTGCGCGCCATTCAGGAAAAGCGCGT
GCGCAAGGTGGGGAGCGTTGCCGAGGAGCCGGTCGATGTCCGGATCATCTGTGCCACGCACAAAAATCTGCGTGAGCTGG
TGGACCGGGGCGCCTTCCGTCAGGACTTGTATTACCGGCTAAATGTCATCGAGCTACGGATGCCGCCGTTGCGCGAGCGT
ATGGAGGATATCGTGCCGCTGGTCGATGCCATCCTGCGCCGGGTCTTCGGCGATGCGCCACCCAAGCTGTCGAGCGGTGC
GGTCAAGGCGCTGTCGTTTTACTCCTTTCCGGGCAATGTCCGCGAACTGGAAAATATTCTCGAGCGGGCAACGGCGCTTT
GTTCTGGTGACCTGATTGAGGTCGAGGACTTACATCTTGGCCCGGAAGAGATGTCAGGAGTCGAGGATCAAGGGCGTGGC
AGTGAAACGCTCGACGAATACCTCAATCGCCTCGAGCGTCAGGCCATTCTCGAAGCCCTGCAGAAAGCCGAAGGCAACCG
CACCGCGGCAGCTCGCCTACTCGGGGTGACCTTCCGCTCGATGCGCTATCGTCTTGAGCGCTTGGGCATCGAGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(17-126)

Sigma-54 interaction domain (Sigma54_activat)

(146-312)

Bacterial regulatory protein, Fis family (HTH_8)

(410-447)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

59.598

99.335

0.592
  pilR Acinetobacter baumannii strain A118

45.316

100

0.461
  luxO Vibrio cholerae strain A1552

37.162

98.448

0.366