Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KI610_RS06160 Genome accession   NZ_CP075189
Coordinates   1265432..1266787 (+) Length   451 a.a.
NCBI ID   WP_319004212.1    Uniprot ID   -
Organism   Ferribacterium limneticum strain 77     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1260432..1271787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI610_RS06140 (KI610_06125) - 1261913..1262740 (+) 828 WP_226497779.1 hypothetical protein -
  KI610_RS20125 (KI610_06130) - 1262837..1263223 (-) 387 WP_404827477.1 helix-turn-helix transcriptional regulator -
  KI610_RS06150 (KI610_06135) - 1263439..1263762 (-) 324 WP_226497781.1 hypothetical protein -
  KI610_RS20020 - 1263676..1263861 (+) 186 WP_264179235.1 PP0621 family protein -
  KI610_RS06155 (KI610_06140) - 1263861..1265474 (+) 1614 WP_226497782.1 PAS domain-containing sensor histidine kinase -
  KI610_RS06160 (KI610_06145) pilR 1265432..1266787 (+) 1356 WP_319004212.1 sigma-54 dependent transcriptional regulator Regulator
  KI610_RS06165 (KI610_06150) ampD 1266787..1267353 (+) 567 WP_226497783.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  KI610_RS06170 (KI610_06155) - 1267330..1268490 (-) 1161 WP_226497784.1 pyridoxal phosphate-dependent aminotransferase -
  KI610_RS06175 (KI610_06160) - 1268563..1270407 (-) 1845 WP_226497785.1 phosphoenolpyruvate carboxykinase (GTP) -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 49535.64 Da        Isoelectric Point: 5.1075

>NTDB_id=568524 KI610_RS06160 WP_319004212.1 1265432..1266787(+) (pilR) [Ferribacterium limneticum strain 77]
MSVARTERRPRGEMSRVLVIDDEADIRELIDLTLVRMGLATECVGSVAEARAALDSDLFQLCLTDMRLPDGDGLEIVRYI
AEHHPQTPIAVITAYGSAENAVAALKAGAFDYLAKPVGLEQLRSLVKSALRLPGGGQDSENPLQSLLGDSPSMQQVRAMI
EKLARSQAPIYISGESGSGKELAARLIHGRSARAAGTFVPVNCGAIPENLMESEFFGYRKGAFTGADSEREGFFQAAHGG
TLFLDEVADLPLAMQVKLLRAIQEKRVRKVGSVAEEPVDVRIICATHKNLRDLVDRGAFRQDLYYRLNVIELRMPPLRER
MEDIVPLVEAILHRVFGDSPPKLSSGAVKALSLYSFPGNVRELENILERATALCSGDLIEVEDLHLGPEEMAGSEEQGRG
SETLDEYLNRLERQAILEALQKSEGNRTAAARLLGVTFRSMRYRLERLGIE

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=568524 KI610_RS06160 WP_319004212.1 1265432..1266787(+) (pilR) [Ferribacterium limneticum strain 77]
GTGTCTGTTGCCAGAACCGAACGGCGCCCGCGCGGCGAAATGAGCCGGGTCCTCGTCATTGACGACGAGGCCGATATCCG
CGAACTGATCGATTTGACGCTCGTCCGCATGGGGCTGGCGACAGAGTGCGTCGGCTCGGTGGCCGAGGCAAGGGCGGCGC
TCGATAGTGATTTGTTTCAGCTTTGCCTGACCGATATGCGCCTGCCGGATGGCGATGGTCTGGAGATCGTCCGATATATT
GCCGAGCACCATCCGCAGACGCCGATTGCCGTGATCACCGCCTACGGCAGCGCCGAAAATGCCGTGGCTGCCCTCAAAGC
CGGCGCCTTCGATTACCTGGCCAAGCCGGTGGGCCTTGAGCAATTGCGCAGCCTCGTCAAGTCGGCCCTGCGCCTGCCGG
GTGGCGGGCAGGATAGCGAGAATCCGCTGCAATCCTTGCTTGGCGATTCGCCGAGCATGCAGCAGGTGCGGGCGATGATT
GAAAAGCTGGCGCGTAGCCAGGCACCTATTTATATCTCCGGCGAGTCGGGTAGCGGCAAGGAGTTGGCGGCGAGGCTGAT
CCATGGCCGAAGTGCGCGGGCGGCTGGCACCTTCGTCCCGGTGAACTGCGGGGCGATTCCTGAAAACCTCATGGAAAGCG
AGTTTTTCGGCTATCGGAAAGGCGCCTTTACCGGTGCCGATAGCGAACGTGAGGGATTTTTCCAGGCTGCTCACGGGGGC
ACCCTGTTCCTCGACGAAGTGGCCGATCTGCCGCTGGCCATGCAGGTCAAGCTCCTGCGTGCCATTCAGGAAAAGCGCGT
ACGCAAGGTGGGGAGCGTGGCCGAGGAGCCGGTCGATGTCCGGATCATCTGCGCCACGCACAAGAATTTGCGGGATCTTG
TCGACCGGGGGGCCTTCCGTCAGGACTTGTATTACCGGCTCAATGTCATCGAGTTGCGTATGCCGCCTTTGCGCGAACGG
ATGGAGGACATTGTGCCACTGGTCGAGGCCATCCTGCACCGGGTTTTTGGCGATTCGCCGCCCAAGCTGTCGAGTGGTGC
AGTCAAGGCGCTGTCGCTTTACTCCTTCCCGGGCAATGTCCGCGAATTGGAAAATATTCTCGAGCGGGCAACCGCGCTGT
GTTCCGGTGACCTGATCGAGGTCGAGGATTTACATCTCGGTCCGGAAGAAATGGCCGGTAGCGAGGAACAAGGGCGGGGC
AGTGAAACGCTCGATGAATATCTTAATCGCCTCGAGCGTCAGGCCATTCTCGAAGCCCTACAGAAGTCCGAAGGCAACCG
GACGGCGGCGGCCCGTCTGCTCGGCGTCACCTTTCGTTCCATGCGCTATCGTCTCGAGCGCCTGGGCATCGAGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(17-126)

Bacterial regulatory protein, Fis family (HTH_8)

(410-447)

Sigma-54 interaction domain (Sigma54_activat)

(147-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

60.268

99.335

0.599
  pilR Acinetobacter baumannii strain A118

45.752

100

0.466
  luxO Vibrio cholerae strain A1552

37.162

98.448

0.366