Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   KIN24_RS19425 Genome accession   NZ_CP075177
Coordinates   4211202..4213424 (+) Length   740 a.a.
NCBI ID   WP_213936050.1    Uniprot ID   -
Organism   Pseudomonas lundensis strain M101     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4206202..4218424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIN24_RS19405 (KIN24_19405) - 4208043..4208666 (+) 624 WP_047280951.1 glutathione S-transferase -
  KIN24_RS19410 (KIN24_19410) - 4208802..4209734 (+) 933 WP_047276274.1 ABC transporter ATP-binding protein -
  KIN24_RS19415 (KIN24_19415) - 4209731..4210510 (+) 780 WP_047276272.1 ABC transporter permease -
  KIN24_RS19420 (KIN24_19420) - 4210553..4211068 (-) 516 WP_047280950.1 DUF2062 domain-containing protein -
  KIN24_RS19425 (KIN24_19425) comA 4211202..4213424 (+) 2223 WP_213936050.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KIN24_RS19430 (KIN24_19430) exbB 4213501..4214136 (+) 636 WP_047276443.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KIN24_RS19435 (KIN24_19435) - 4214133..4214561 (+) 429 WP_047277327.1 biopolymer transporter ExbD -
  KIN24_RS19440 (KIN24_19440) lpxK 4214561..4215571 (+) 1011 WP_047276264.1 tetraacyldisaccharide 4'-kinase -
  KIN24_RS19445 (KIN24_19445) - 4215596..4215781 (+) 186 WP_047276262.1 Trm112 family protein -
  KIN24_RS19450 (KIN24_19450) kdsB 4215778..4216541 (+) 764 Protein_3831 3-deoxy-manno-octulosonate cytidylyltransferase -
  KIN24_RS19455 (KIN24_19455) - 4216541..4217005 (+) 465 WP_047276258.1 low molecular weight protein-tyrosine-phosphatase -
  KIN24_RS19460 (KIN24_19460) murB 4217002..4218021 (+) 1020 WP_047282852.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 80374.12 Da        Isoelectric Point: 10.0412

>NTDB_id=568366 KIN24_RS19425 WP_213936050.1 4211202..4213424(+) (comA) [Pseudomonas lundensis strain M101]
MYTGMTGLALGLMALGYLPVLPPAGWLRVLCGLAVGLMFFRTYPVGLWLLGLVWACVQGQSALDDRLSDALDGRTLWIEG
RVTGLPQRTASYVGFDIDTPVSRRAELPRTLRLSWQGGPPVNSGERWRLAVKLKKPRGLLNPQGFDYEAWLLSKRIGATG
TVKDGQRLATASAAWRDGLRQRLLSVEAHGRAPWLAALVMGDGSGLDREDWKLLQTTGTVHLLVISGQHIGLFAGLLYGL
IALLARYGIWPRGWPWLPWACGMAFVGAVSYGLLAGFEVPVQRACVMLGLVLLWRLRFRHLGVWLPFLLALNAVLLVEPL
ASLMPGFWLSFAAVAVLIFTFSGRLGAWSQWSAWTRPHGLIALGLFPVMWALALPVSATGPLANLVAVPWISLLVLPSAL
LGTFLLPVPWLGEGLLWVSGGLLDVLIRGLTWLAGTFPAWLPPAVPIGIWALTAAGVVMLLLPAGVALRPLGWPLLALAL
LAPREQVPHGQVEVWQLDVGQGLAMLLRTRHHTLLYDAGPTLRDLDQGERVVVPFLRSQGIHELDLMLISHADSDHAGGA
LAVQRALNVKQVISGDVPGLPAQLQAQPCAAQDGWEWDGVRFSLWQWPDASNGNQKSCVLLVQAGDERLLLTGDIDAQAE
RAFLRSPLAVPVQWLQAPHHGSRTSSSRVFLNALSAQHVLISRGAGNSFGHPHPQVLARYRALGMTVLDSAEQGAVRLSL
GAKGVALGERQQRRFWRLDG

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=568366 KIN24_RS19425 WP_213936050.1 4211202..4213424(+) (comA) [Pseudomonas lundensis strain M101]
ATGTACACAGGGATGACAGGGCTGGCGCTGGGGTTGATGGCGTTGGGGTATTTGCCGGTACTGCCCCCGGCAGGGTGGTT
AAGGGTGTTGTGCGGCCTTGCAGTAGGGCTGATGTTTTTTCGAACGTACCCGGTCGGGTTGTGGCTGCTGGGGTTGGTGT
GGGCGTGCGTGCAGGGGCAGTCGGCGCTGGATGACCGCCTGTCGGATGCCCTCGACGGTCGCACCCTCTGGATTGAAGGG
CGGGTGACCGGGTTGCCGCAACGCACGGCGTCCTACGTAGGGTTTGACATCGATACGCCCGTCTCTCGTCGGGCTGAGTT
GCCGCGCACGCTTCGCTTGAGCTGGCAGGGTGGTCCGCCGGTTAACAGTGGCGAACGCTGGCGCCTGGCCGTGAAGCTGA
AAAAGCCGCGGGGTCTGCTTAATCCTCAGGGGTTTGATTACGAGGCGTGGTTGCTCAGCAAGCGGATAGGCGCAACCGGA
ACGGTCAAGGACGGGCAGCGGCTGGCGACAGCCTCTGCTGCGTGGCGCGACGGGTTGCGTCAACGTTTGTTGAGTGTCGA
GGCCCATGGCCGGGCGCCTTGGCTGGCGGCGCTGGTGATGGGGGACGGCTCCGGTCTGGATCGCGAAGACTGGAAGCTGC
TGCAAACCACAGGCACCGTGCATTTATTGGTGATCTCGGGGCAGCACATCGGTTTGTTTGCCGGATTGCTCTATGGGCTG
ATCGCACTGCTCGCGCGTTATGGCATATGGCCCCGAGGCTGGCCGTGGCTGCCTTGGGCGTGTGGTATGGCGTTTGTGGG
GGCGGTCAGTTATGGCCTGTTGGCCGGATTTGAAGTGCCAGTGCAGCGCGCCTGCGTGATGCTGGGGCTGGTGCTGTTAT
GGCGTCTGCGCTTTCGGCATTTAGGGGTGTGGTTGCCATTTTTGCTGGCGTTGAATGCGGTGTTGCTGGTGGAGCCGTTA
GCCAGCCTGATGCCTGGTTTTTGGCTTTCATTTGCAGCGGTTGCCGTGCTGATTTTTACGTTCAGCGGGCGTTTGGGGGC
GTGGAGTCAGTGGTCTGCCTGGACAAGGCCACACGGCCTGATTGCCCTGGGGCTGTTTCCCGTGATGTGGGCCTTGGCGT
TACCCGTGAGTGCGACCGGCCCGCTGGCGAACCTGGTGGCGGTGCCGTGGATCAGCCTGCTGGTGTTGCCCTCAGCGTTG
CTGGGCACCTTCTTGCTGCCCGTGCCCTGGCTGGGAGAGGGGTTACTCTGGGTGTCCGGCGGTCTGCTGGACGTGTTGAT
ACGCGGTTTGACCTGGTTGGCGGGGACATTCCCGGCCTGGTTGCCGCCAGCCGTACCGATCGGCATTTGGGCGCTGACGG
CGGCAGGGGTTGTGATGCTGCTGTTGCCGGCGGGCGTTGCGCTGAGGCCATTGGGGTGGCCGCTGCTGGCATTGGCGTTG
CTTGCGCCGCGCGAGCAGGTCCCGCACGGTCAGGTTGAGGTCTGGCAACTGGACGTCGGGCAAGGGTTGGCCATGCTGTT
GCGCACGCGCCACCACACCCTGCTTTATGACGCGGGCCCCACGCTTCGGGATCTGGATCAGGGGGAGCGGGTGGTCGTAC
CTTTTCTGCGCTCGCAAGGCATCCATGAGCTGGATTTGATGCTGATCAGCCATGCCGACTCAGACCACGCAGGGGGGGCG
TTGGCGGTCCAGCGAGCGCTGAACGTCAAGCAGGTGATCAGCGGCGACGTACCCGGTTTGCCCGCTCAGTTACAGGCTCA
ACCTTGCGCCGCGCAAGACGGCTGGGAGTGGGACGGTGTGCGCTTCTCGCTTTGGCAATGGCCGGACGCCAGCAACGGCA
ACCAAAAGTCCTGTGTGCTCTTGGTACAGGCTGGCGATGAGCGGCTATTGCTGACCGGAGACATCGACGCGCAGGCTGAG
CGGGCTTTTTTGCGCAGCCCTTTGGCGGTCCCGGTGCAGTGGTTGCAAGCTCCGCATCACGGCAGCCGCACCTCGTCGTC
CCGGGTGTTTCTGAACGCGCTGTCTGCGCAACATGTCTTGATTTCACGCGGGGCTGGCAACAGTTTTGGTCACCCGCACC
CTCAGGTATTGGCTCGTTACCGGGCGTTGGGCATGACGGTGCTCGACAGTGCAGAACAAGGCGCCGTGCGTTTGAGCCTG
GGGGCGAAGGGGGTGGCCCTGGGCGAGCGTCAACAACGCAGGTTCTGGCGCCTTGACGGGTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Competence protein (Competence)

(198-462)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-671)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.142

97.027

0.593
  comA Ralstonia pseudosolanacearum GMI1000

34.268

100

0.364