Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KIN24_RS19430 Genome accession   NZ_CP075177
Coordinates   4213501..4214136 (+) Length   211 a.a.
NCBI ID   WP_047276443.1    Uniprot ID   A0AAX2HCF4
Organism   Pseudomonas lundensis strain M101     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4208501..4219136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIN24_RS19410 (KIN24_19410) - 4208802..4209734 (+) 933 WP_047276274.1 ABC transporter ATP-binding protein -
  KIN24_RS19415 (KIN24_19415) - 4209731..4210510 (+) 780 WP_047276272.1 ABC transporter permease -
  KIN24_RS19420 (KIN24_19420) - 4210553..4211068 (-) 516 WP_047280950.1 DUF2062 domain-containing protein -
  KIN24_RS19425 (KIN24_19425) comA 4211202..4213424 (+) 2223 WP_213936050.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KIN24_RS19430 (KIN24_19430) exbB 4213501..4214136 (+) 636 WP_047276443.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KIN24_RS19435 (KIN24_19435) - 4214133..4214561 (+) 429 WP_047277327.1 biopolymer transporter ExbD -
  KIN24_RS19440 (KIN24_19440) lpxK 4214561..4215571 (+) 1011 WP_047276264.1 tetraacyldisaccharide 4'-kinase -
  KIN24_RS19445 (KIN24_19445) - 4215596..4215781 (+) 186 WP_047276262.1 Trm112 family protein -
  KIN24_RS19450 (KIN24_19450) kdsB 4215778..4216541 (+) 764 Protein_3831 3-deoxy-manno-octulosonate cytidylyltransferase -
  KIN24_RS19455 (KIN24_19455) - 4216541..4217005 (+) 465 WP_047276258.1 low molecular weight protein-tyrosine-phosphatase -
  KIN24_RS19460 (KIN24_19460) murB 4217002..4218021 (+) 1020 WP_047282852.1 UDP-N-acetylmuramate dehydrogenase -
  KIN24_RS19465 (KIN24_19465) - 4218066..4218677 (+) 612 WP_047276253.1 hypothetical protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22899.09 Da        Isoelectric Point: 6.8762

>NTDB_id=568367 KIN24_RS19430 WP_047276443.1 4213501..4214136(+) (exbB) [Pseudomonas lundensis strain M101]
MWELVKSGGWMMLPIILSSVAALGIIVERLWTLRASRVTPPHLLGQVWVWIKDKQLDKEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAILAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDREVDMAGSTA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=568367 KIN24_RS19430 WP_047276443.1 4213501..4214136(+) (exbB) [Pseudomonas lundensis strain M101]
GTGTGGGAACTGGTCAAATCCGGTGGCTGGATGATGCTGCCGATCATTCTGAGCTCTGTTGCCGCGCTGGGCATTATTGT
CGAGCGTCTTTGGACATTACGCGCCAGCCGCGTGACGCCGCCTCATCTCTTGGGGCAAGTTTGGGTCTGGATCAAAGACA
AGCAGCTGGACAAAGAGAAACTCAAACAACTGCGTGCTGATTCGCCACTGGGTGAAATCCTTGCGGCGGGTCTGGCCAAC
TCCCGGCACGGTCGCGAGATCATGAAAGAGTGCATTGAGGAAGCGGCTGCCCGTGTGATTCACGAACTGGAGCGCTACCT
CAACGCGCTGGGCACGATCGCCGCCATGGCCCCGTTGCTGGGCCTGCTGGGCACCGTACTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAATGCTGCAATCCTGGCAGGCGGTATCTCCAAAGCGTTGATCACCACGGCA
GCGGGCCTGATGGTGGGTATCCCGGCGGTGTTCTTCCATCGTTTCCTGCAGCGCCGCGTCGACGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAACTGGTTGAAGTCGTTCAAGGCGACCGCGAAGTCGACATGGCCGGGAGCACAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858